Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   UXR22_RS01925 Genome accession   NZ_CP149937
Coordinates   419719..420222 (+) Length   167 a.a.
NCBI ID   WP_001551992.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 414719..425222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR22_RS01895 (UXR22_01895) - 415656..416501 (+) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -
  UXR22_RS01900 (UXR22_01900) - 416658..417539 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  UXR22_RS01905 (UXR22_01905) - 417569..417772 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  UXR22_RS01910 (UXR22_01910) ychF 417784..418881 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  UXR22_RS01915 (UXR22_01915) - 418967..419158 (-) 192 WP_001052483.1 hypothetical protein -
  UXR22_RS01920 (UXR22_01920) rpsF 419402..419698 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  UXR22_RS01925 (UXR22_01925) ssbA 419719..420222 (+) 504 WP_001551992.1 single-stranded DNA-binding protein Machinery gene
  UXR22_RS01930 (UXR22_01930) rpsR 420274..420516 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  UXR22_RS01935 (UXR22_01935) - 420782..421720 (-) 939 WP_001822249.1 Abi family protein -
  UXR22_RS01940 (UXR22_01940) - 421759..422460 (-) 702 Protein_384 tyrosine-type recombinase/integrase -
  UXR22_RS01945 (UXR22_01945) selX 422666..423277 (+) 612 WP_000475326.1 staphylococcal enterotoxin-like toxin X -
  UXR22_RS01950 (UXR22_01950) - 423646..424014 (+) 369 WP_000849177.1 YxeA family protein -
  UXR22_RS01955 (UXR22_01955) - 424195..424767 (+) 573 WP_000769720.1 PepSY domain-containing protein -
  UXR22_RS01960 (UXR22_01960) - 424905..425168 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18529.08 Da        Isoelectric Point: 4.7305

>NTDB_id=962248 UXR22_RS01925 WP_001551992.1 419719..420222(+) (ssbA) [Staphylococcus aureus strain BSN124]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLESKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=962248 UXR22_RS01925 WP_001551992.1 419719..420222(+) (ssbA) [Staphylococcus aureus strain BSN124]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAATCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

55.556

100

0.569
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

63.473

0.365