Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WDB71_RS01300 Genome accession   NZ_CP149925
Coordinates   256833..257366 (+) Length   177 a.a.
NCBI ID   WP_341504164.1    Uniprot ID   -
Organism   Gallaecimonas sp. GXIMD4217     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 251833..262366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDB71_RS01290 (WDB71_01290) uvrA 252466..255285 (-) 2820 WP_341502848.1 excinuclease ABC subunit UvrA -
  WDB71_RS01295 (WDB71_01295) - 255388..256752 (+) 1365 WP_341502849.1 MFS transporter -
  WDB71_RS01300 (WDB71_01300) ssb 256833..257366 (+) 534 WP_341504164.1 single-stranded DNA-binding protein Machinery gene
  WDB71_RS01305 (WDB71_01305) - 257419..259017 (+) 1599 WP_341502850.1 EAL domain-containing protein -
  WDB71_RS01310 (WDB71_01310) - 259014..259907 (-) 894 WP_341502851.1 pyridoxal-phosphate dependent enzyme -
  WDB71_RS01315 (WDB71_01315) - 259984..260832 (+) 849 WP_341502852.1 hypothetical protein -
  WDB71_RS01320 (WDB71_01320) - 260829..261425 (+) 597 WP_341502853.1 PilN domain-containing protein -
  WDB71_RS01325 (WDB71_01325) - 261409..262044 (+) 636 WP_341502854.1 hypothetical protein -
  WDB71_RS01330 (WDB71_01330) - 262001..262339 (+) 339 WP_341502855.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19172.88 Da        Isoelectric Point: 5.2536

>NTDB_id=962211 WDB71_RS01300 WP_341504164.1 256833..257366(+) (ssb) [Gallaecimonas sp. GXIMD4217]
MPNGNAVANFTVATSESWKDKQTGEQKEQTEWHRIVMYRRLAEIAGEYLRKGSKVYIEGRLQTRKWQGQDGQDRYTTEIV
ANEMQMLDSRSGGQGGGQGGFQPKPAQQQGGFGGQQGGQGGYGGQQGGQGGYGGQQGGQQQGGFQPKPQPAPQQNKPQGG
YGDPMEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=962211 WDB71_RS01300 WP_341504164.1 256833..257366(+) (ssb) [Gallaecimonas sp. GXIMD4217]
ATGCCCAACGGCAATGCCGTTGCCAATTTCACCGTCGCCACCAGCGAAAGCTGGAAGGACAAGCAGACAGGTGAGCAGAA
AGAGCAGACCGAATGGCACCGCATCGTCATGTACCGTCGCCTGGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCCA
AGGTCTATATCGAAGGTCGCCTGCAGACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACAGAGATCGTT
GCCAACGAGATGCAGATGCTGGACTCCCGTAGCGGTGGCCAGGGCGGCGGCCAGGGTGGCTTCCAGCCCAAGCCGGCCCA
GCAGCAGGGCGGCTTCGGCGGCCAGCAGGGTGGCCAGGGCGGCTACGGCGGCCAGCAGGGCGGCCAGGGTGGCTACGGTG
GCCAGCAGGGCGGGCAGCAGCAGGGCGGCTTCCAGCCCAAGCCTCAGCCGGCCCCCCAGCAGAACAAGCCCCAGGGCGGC
TACGGCGATCCCATGGAACCGCCCATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.801

100

0.571
  ssb Vibrio cholerae strain A1552

52.717

100

0.548
  ssb Neisseria gonorrhoeae MS11

43.784

100

0.458
  ssb Neisseria meningitidis MC58

45.198

100

0.452