Detailed information NTG0962133

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QN030_RS21135
• Genome accession: NZ_CP149893
• Coordinates: 4307504..4308304 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 3213
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4302504..4313304

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN030_RS21100 (QN030_21075)	gspH	4302657..4303172 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
QN030_RS21105 (QN030_21080)	gspI	4303169..4303534 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QN030_RS21110 (QN030_21085)	gspJ	4303531..4304127 (+)	597	WP_159193459.1	type II secretion system minor pseudopilin GspJ	-
QN030_RS21115 (QN030_21090)	gspK	4304124..4305110 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
QN030_RS21120 (QN030_21095)	gspL	4305097..4306293 (+)	1197	WP_159193460.1	type II secretion system protein GspL	-
QN030_RS21125 (QN030_21100)	-	4306286..4306771 (+)	486	WP_004145896.1	type II secretion system protein M	-
QN030_RS21130 (QN030_21105)	-	4306761..4307507 (+)	747	WP_159193461.1	type II secretion system protein N	-
QN030_RS21135 (QN030_21110)	pilD	4307504..4308304 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
QN030_RS21140 (QN030_21115)	hrpB	4308352..4310781 (-)	2430	WP_265679017.1	ATP-dependent helicase HrpB	-
QN030_RS21145 (QN030_21120)	thpR	4310854..4311390 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
QN030_RS21150 (QN030_21125)	sfsA	4311390..4312106 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QN030_RS21155 (QN030_21130)	dksA	4312269..4312724 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=962133 QN030_RS21135 WP_004145898.1 4307504..4308304(+) (pilD) [Klebsiella pneumoniae strain 3213]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=962133 QN030_RS21135 WP_004145898.1 4307504..4308304(+) (pilD) [Klebsiella pneumoniae strain 3213]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGTGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425