Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACJED3_RS19585 Genome accession   NZ_CP174155
Coordinates   3701447..3702142 (+) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain G01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3696447..3707142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS19565 folC 3697378..3698670 (+) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACJED3_RS19570 comC 3698810..3699556 (+) 747 WP_072592551.1 A24 family peptidase Machinery gene
  ACJED3_RS19575 spoIIB 3699690..3700688 (+) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  ACJED3_RS19580 maf 3700841..3701410 (+) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  ACJED3_RS19585 ysxA/radC 3701447..3702142 (+) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  ACJED3_RS19590 mreB 3702234..3703247 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACJED3_RS19595 mreC 3703278..3704150 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACJED3_RS19600 mreD 3704147..3704665 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACJED3_RS19605 minC 3704718..3705398 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  ACJED3_RS19610 minD 3705400..3706206 (+) 807 WP_014480454.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=962024 ACJED3_RS19585 WP_014480455.1 3701447..3702142(+) (ysxA/radC) [Bacillus subtilis strain G01]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=962024 ACJED3_RS19585 WP_014480455.1 3701447..3702142(+) (ysxA/radC) [Bacillus subtilis strain G01]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424