Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WKU69_RS18355 Genome accession   NZ_CP149838
Coordinates   3769209..3769790 (-) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain 2024CK-00130     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3764209..3774790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKU69_RS18345 (WKU69_18345) - 3765345..3767459 (-) 2115 WP_000120453.1 peptidase domain-containing ABC transporter -
  WKU69_RS18350 (WKU69_18350) - 3767461..3768636 (-) 1176 WP_227503846.1 efflux RND transporter periplasmic adaptor subunit -
  WKU69_RS18355 (WKU69_18355) ssb 3769209..3769790 (-) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  WKU69_RS18360 (WKU69_18360) - 3769842..3771206 (-) 1365 WP_031949855.1 MFS transporter -
  WKU69_RS18365 (WKU69_18365) - 3771354..3772436 (-) 1083 WP_000680213.1 DUF475 domain-containing protein -
  WKU69_RS18370 (WKU69_18370) tenA 3772699..3773373 (+) 675 WP_000899418.1 thiaminase II -
  WKU69_RS18375 (WKU69_18375) - 3773423..3773764 (-) 342 WP_000263324.1 GlpM family protein -
  WKU69_RS18380 (WKU69_18380) - 3773817..3774170 (-) 354 WP_000901439.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=961895 WKU69_RS18355 WP_001215080.1 3769209..3769790(-) (ssb) [Acinetobacter baumannii strain 2024CK-00130]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=961895 WKU69_RS18355 WP_001215080.1 3769209..3769790(-) (ssb) [Acinetobacter baumannii strain 2024CK-00130]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGCCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394