Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WKI13_RS16895 Genome accession   NZ_CP149817
Coordinates   4245100..4245603 (-) Length   167 a.a.
NCBI ID   WP_018274047.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain T7902     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4240100..4250603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI13_RS16875 (WKI13_16875) galU 4241134..4241967 (-) 834 WP_018274044.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  WKI13_RS16880 (WKI13_16880) fabA 4242186..4242710 (+) 525 WP_015820382.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  WKI13_RS16885 (WKI13_16885) fabB 4242795..4244009 (+) 1215 WP_018274045.1 beta-ketoacyl-ACP synthase I -
  WKI13_RS16890 (WKI13_16890) - 4244147..4245025 (-) 879 WP_018274046.1 sugar nucleotide-binding protein -
  WKI13_RS16895 (WKI13_16895) ssb 4245100..4245603 (-) 504 WP_018274047.1 single-stranded DNA-binding protein Machinery gene
  WKI13_RS16900 (WKI13_16900) - 4245694..4247040 (-) 1347 WP_018274048.1 MFS transporter -
  WKI13_RS16905 (WKI13_16905) - 4247400..4248062 (+) 663 WP_015817502.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18153.99 Da        Isoelectric Point: 5.2494

>NTDB_id=961671 WKI13_RS16895 WP_018274047.1 4245100..4245603(-) (ssb) [Teredinibacter turnerae strain T7902]
MATRGVNKVILVGNLGQDPETRYMPSGGAVTNISIATSESWKDKQTGQNQERTEWHRVAFFGRLAEIAGEYLRKGSKVYV
EGSLRTRKWQDQQGQDRYSTEIVASEMQMLDARGAGEGQGYGGGGGGYDAPAPQQHQPQAPRQAPAPQQAPPSAPPSMDS
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=961671 WKI13_RS16895 WP_018274047.1 4245100..4245603(-) (ssb) [Teredinibacter turnerae strain T7902]
GTGGCTACGAGAGGTGTTAACAAGGTAATTTTGGTTGGTAATCTCGGCCAGGACCCGGAAACGCGCTATATGCCTTCAGG
CGGCGCAGTAACGAATATCAGTATCGCGACTTCCGAGAGCTGGAAGGATAAGCAAACAGGACAGAACCAGGAGCGAACAG
AGTGGCATCGTGTTGCATTCTTTGGTCGTCTGGCTGAGATCGCAGGAGAATATCTGCGTAAAGGTAGCAAAGTTTATGTA
GAGGGCTCTCTGCGCACGCGCAAGTGGCAGGATCAGCAGGGTCAGGATCGGTATTCTACGGAAATTGTTGCAAGCGAAAT
GCAAATGTTAGACGCGCGCGGCGCTGGCGAGGGGCAAGGATATGGCGGCGGCGGCGGTGGCTACGATGCTCCCGCACCAC
AGCAGCATCAGCCGCAGGCACCCCGGCAGGCTCCGGCTCCGCAGCAAGCGCCACCTTCGGCGCCACCGTCAATGGACAGC
TTCGACGACGATATCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.87

100

0.671
  ssb Glaesserella parasuis strain SC1401

54.891

100

0.605
  ssb Neisseria meningitidis MC58

48.555

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.555

100

0.503