Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   WKI13_RS04965 Genome accession   NZ_CP149817
Coordinates   1228336..1229403 (+) Length   355 a.a.
NCBI ID   WP_015817639.1    Uniprot ID   C5BRK3
Organism   Teredinibacter turnerae strain T7902     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223336..1234403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI13_RS04955 (WKI13_04955) rpmE 1225257..1225466 (-) 210 WP_018275457.1 50S ribosomal protein L31 -
  WKI13_RS04960 (WKI13_04960) - 1225617..1228181 (-) 2565 WP_157234606.1 penicillin-binding protein 1A -
  WKI13_RS04965 (WKI13_04965) pilM 1228336..1229403 (+) 1068 WP_015817639.1 pilus assembly protein PilM Machinery gene
  WKI13_RS04970 (WKI13_04970) - 1229405..1229965 (+) 561 WP_018275459.1 PilN domain-containing protein -
  WKI13_RS04975 (WKI13_04975) - 1229967..1230590 (+) 624 WP_018275460.1 type 4a pilus biogenesis protein PilO -
  WKI13_RS04980 (WKI13_04980) - 1230590..1231120 (+) 531 WP_015819582.1 pilus assembly protein PilP -
  WKI13_RS04985 (WKI13_04985) - 1231125..1233308 (+) 2184 WP_018275461.1 type IV pilus secretin PilQ family protein -
  WKI13_RS04990 (WKI13_04990) aroK 1233311..1233820 (+) 510 WP_018275462.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38257.47 Da        Isoelectric Point: 4.2535

>NTDB_id=961657 WKI13_RS04965 WP_015817639.1 1228336..1229403(+) (pilM) [Teredinibacter turnerae strain T7902]
MGILSLFDKKKNPVLGLDVSSTTVKLLEFSQQGNGYRVENYAVRALPPNAVVEKNINDVEAVAQAIKAVVQSSRTKVKDC
AVAVPGSSVITKVIEMPGDLGEEALESQISLEADQYIPYPLEEVAIDFDVLGPSAKNPDQVEVLLAACRRENVDIRASVL
ELADLRAKVVDVEAYTMERAFGLIQEQLEDQEEQVVAILDIGATMTTLSVLVDGKTIYTREQLFGGKQLTEEIQRRYGLS
AEEAGLAKKQGGLPDDYEPEVLEPFKDAVVQQVTRSLQFFFSSSQYNDVDHIVLAGGVASLSGLAGLIEEKLGTSATVAN
PFANMSVSSRVNATALSNDAPSLMIATGLAMRGFV

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=961657 WKI13_RS04965 WP_015817639.1 1228336..1229403(+) (pilM) [Teredinibacter turnerae strain T7902]
ATGGGCATTCTCAGTTTGTTCGACAAAAAAAAGAATCCCGTGCTCGGCTTAGATGTGAGTTCGACAACAGTTAAGTTGTT
AGAGTTCAGTCAGCAAGGTAACGGCTATAGGGTCGAGAACTATGCTGTGCGTGCTCTGCCACCCAATGCGGTGGTCGAAA
AAAACATCAATGACGTTGAGGCGGTCGCCCAGGCTATCAAAGCTGTGGTGCAATCGTCGCGGACCAAAGTCAAAGATTGT
GCCGTTGCTGTCCCTGGCTCCTCTGTTATAACCAAAGTTATTGAAATGCCCGGAGATTTGGGGGAAGAAGCGCTTGAGTC
GCAAATATCCCTGGAGGCAGATCAGTACATTCCTTACCCGCTCGAGGAAGTCGCCATCGACTTTGATGTGCTGGGTCCTT
CCGCTAAAAATCCAGATCAGGTTGAAGTGTTACTCGCAGCTTGTCGACGCGAAAACGTTGATATTCGAGCATCTGTCCTC
GAACTGGCAGACTTACGAGCCAAAGTGGTCGACGTGGAAGCCTACACGATGGAGCGCGCGTTTGGGCTCATCCAGGAGCA
GCTGGAAGATCAGGAAGAGCAGGTGGTAGCGATTTTAGATATTGGCGCCACTATGACGACCTTGAGTGTGTTGGTGGATG
GCAAAACTATTTATACGCGCGAGCAGTTGTTTGGTGGTAAGCAGCTCACCGAAGAAATTCAGCGCCGCTATGGTTTGTCC
GCGGAAGAAGCCGGTTTGGCGAAAAAACAGGGCGGCTTGCCAGATGATTACGAGCCAGAAGTGCTTGAGCCATTTAAAGA
CGCCGTTGTTCAGCAAGTGACACGTTCATTGCAATTCTTCTTTTCATCAAGCCAATACAACGATGTAGACCACATTGTTC
TCGCCGGCGGTGTGGCTTCGCTCTCTGGCTTGGCCGGTTTAATTGAAGAAAAGCTAGGCACATCTGCGACAGTCGCAAAT
CCGTTTGCGAATATGTCGGTTTCATCGCGGGTGAATGCAACCGCGCTTTCAAATGACGCGCCTTCGCTGATGATTGCAAC
GGGGCTGGCTATGAGGGGCTTTGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BRK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.398

99.155

0.549
  comM Acinetobacter nosocomialis M2

55.398

99.155

0.549
  comM Acinetobacter baylyi ADP1

53.409

99.155

0.53
  pilM Legionella pneumophila strain ERS1305867

45.869

98.873

0.454