Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   V8N34_RS07880 Genome accession   NZ_CP149804
Coordinates   1625833..1626477 (+) Length   214 a.a.
NCBI ID   WP_318825591.1    Uniprot ID   A0AAJ2PIQ9
Organism   Streptococcus suis strain YA     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1620833..1631477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS07860 (V8N34_07860) pflA 1621979..1622770 (-) 792 WP_012027587.1 pyruvate formate-lyase-activating protein -
  V8N34_RS07865 (V8N34_07865) - 1622891..1624228 (-) 1338 WP_024381653.1 hemolysin family protein -
  V8N34_RS07870 (V8N34_07870) - 1624361..1625140 (+) 780 WP_024413450.1 ABC transporter ATP-binding protein -
  V8N34_RS07875 (V8N34_07875) - 1625157..1625711 (-) 555 WP_024413451.1 class I SAM-dependent methyltransferase -
  V8N34_RS07880 (V8N34_07880) cclA/cilC 1625833..1626477 (+) 645 WP_318825591.1 prepilin peptidase Machinery gene
  V8N34_RS07885 (V8N34_07885) - 1626585..1628045 (+) 1461 WP_044754292.1 nicotinate phosphoribosyltransferase -
  V8N34_RS07890 (V8N34_07890) nadE 1628058..1628882 (+) 825 WP_044754291.1 ammonia-dependent NAD(+) synthetase -
  V8N34_RS07895 (V8N34_07895) - 1629184..1630754 (+) 1571 WP_318825597.1 IS3 family transposase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24262.43 Da        Isoelectric Point: 8.4717

>NTDB_id=961514 V8N34_RS07880 WP_318825591.1 1625833..1626477(+) (cclA/cilC) [Streptococcus suis strain YA]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLYLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=961514 V8N34_RS07880 WP_318825591.1 1625833..1626477(+) (cclA/cilC) [Streptococcus suis strain YA]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGTAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACCTAATTCCAATCCTATCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTAGAATTCTTAGCTGGT
CTCGTTGTCCTGCTCTGCCATTTTCAAGTCCTATACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTTGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGATTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCCATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50

99.065

0.495
  cclA/cilC Streptococcus pneumoniae Rx1

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae D39

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae R6

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

48.544

96.262

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

46.226

99.065

0.458