Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V8N34_RS02110 Genome accession   NZ_CP149804
Coordinates   426568..427233 (+) Length   221 a.a.
NCBI ID   WP_172060511.1    Uniprot ID   A0AAJ2UHN4
Organism   Streptococcus suis strain YA     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421568..432233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS02085 (V8N34_02085) - 421779..423179 (+) 1401 WP_172060507.1 Cof-type HAD-IIB family hydrolase -
  V8N34_RS02090 (V8N34_02090) - 423181..423552 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  V8N34_RS02095 (V8N34_02095) cysK 423578..424504 (-) 927 WP_172060508.1 cysteine synthase A -
  V8N34_RS02100 (V8N34_02100) - 424594..425226 (-) 633 WP_172060509.1 YigZ family protein -
  V8N34_RS02105 (V8N34_02105) comFA/cflA 425283..426575 (+) 1293 WP_172060510.1 helicase-related protein Machinery gene
  V8N34_RS02110 (V8N34_02110) comFC/cflB 426568..427233 (+) 666 WP_172060511.1 ComF family protein Machinery gene
  V8N34_RS02115 (V8N34_02115) raiA 427310..427852 (+) 543 WP_004194117.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25782.57 Da        Isoelectric Point: 8.4541

>NTDB_id=961497 V8N34_RS02110 WP_172060511.1 426568..427233(+) (comFC/cflB) [Streptococcus suis strain YA]
MSNCLLCGQTMKNKTRFSDLIFFSKEKTGTCEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLETKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=961497 V8N34_RS02110 WP_172060511.1 426568..427233(+) (comFC/cflB) [Streptococcus suis strain YA]
ATGTCTAATTGTCTATTGTGCGGTCAAACTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
AACGGGTACTTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAACAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae Rx1

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae D39

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae R6

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae TIGR4

49.541

98.643

0.489
  comFC/cflB Streptococcus mitis NCTC 12261

49.541

98.643

0.489