Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V8N34_RS00345 Genome accession   NZ_CP149804
Coordinates   55893..56792 (+) Length   299 a.a.
NCBI ID   WP_339059846.1    Uniprot ID   -
Organism   Streptococcus suis strain YA     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 50893..61792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS00325 (V8N34_00325) - 51657..53372 (+) 1716 WP_184493691.1 ABC transporter ATP-binding protein -
  V8N34_RS00330 (V8N34_00330) - 53474..53647 (+) 174 WP_014637276.1 hypothetical protein -
  V8N34_RS00335 (V8N34_00335) ruvB 53942..54943 (+) 1002 WP_024377694.1 Holliday junction branch migration DNA helicase RuvB -
  V8N34_RS00340 (V8N34_00340) - 55011..55646 (+) 636 WP_172060542.1 HAD-IA family hydrolase -
  V8N34_RS00345 (V8N34_00345) comR 55893..56792 (+) 900 WP_339059846.1 helix-turn-helix domain-containing protein Regulator
  V8N34_RS00350 (V8N34_00350) - 57001..58215 (+) 1215 WP_029749649.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  V8N34_RS00355 (V8N34_00355) - 58412..59935 (+) 1524 WP_044763875.1 quinol oxidase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35248.26 Da        Isoelectric Point: 4.6321

>NTDB_id=961478 V8N34_RS00345 WP_339059846.1 55893..56792(+) (comR) [Streptococcus suis strain YA]
MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGTSKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEELVEKRDAIMTEIYDDYYDDLPEEEKIAIDAIQSRIDTLESGIAGFGKEILEDYFEQIFRKQKYEVND
LLIIRLQLEYVRLSSNDSEIFRQFLKIIEALHGQIDIINSSDLFVLRDTLLSCVNILGSKKYYEPIPKIFDSVDKIIRLT
QDFQKKPIVSVLKWKYALFVNKDRGEAEKHYLDAILFAKLIENRELEQKIEEDWKVDNQ

Nucleotide


Download         Length: 900 bp        

>NTDB_id=961478 V8N34_RS00345 WP_339059846.1 55893..56792(+) (comR) [Streptococcus suis strain YA]
ATGAACGATAAGGAATTTGGACAGCGTGTACGTCAATTACGAGAATCTGCTAGTATGACACGTGAACAGTTTTGTGACGA
TGAACTGGAACTCTCTGTGCGCCAATTAACTCGTATTGAAGCAGGTACTTCCAAGCCGACTTTTTCAAAGATTCAGTATA
TTGCAACTCGTTTAGGTATGGGACTTTACGAGCTTATGCCAGATTACGTATCCTTACCCGAAAGATATTCCAAGCTGAAA
TTTGATGTGCTTCGCACACCGACTTACGGAAACGAAGAGTTGGTTGAAAAACGAGATGCTATCATGACGGAAATCTACGA
TGACTATTATGATGACTTGCCTGAGGAGGAGAAAATAGCGATAGATGCGATTCAATCACGAATTGATACCTTAGAGTCAG
GGATAGCAGGCTTTGGAAAAGAGATACTGGAAGATTACTTTGAACAAATTTTTCGAAAACAAAAGTACGAAGTGAATGAT
TTACTGATTATTAGGCTCCAGCTCGAATATGTTAGGTTATCTAGTAATGATTCAGAAATATTTAGACAGTTTTTGAAAAT
TATAGAAGCCTTACATGGACAAATTGATATCATCAATTCAAGTGATTTATTTGTTTTACGAGATACATTGTTATCTTGTG
TAAATATTTTGGGAAGCAAAAAGTATTATGAACCAATACCAAAGATATTCGACAGTGTAGATAAAATTATTCGGTTGACA
CAAGATTTTCAGAAAAAGCCAATTGTCAGTGTATTGAAATGGAAATACGCACTTTTTGTAAATAAGGATAGAGGTGAGGC
TGAAAAGCATTATCTAGATGCGATTCTATTTGCAAAATTGATAGAAAATAGAGAGTTAGAACAGAAGATTGAAGAAGATT
GGAAAGTTGACAATCAATAA

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)

Helix-turn-helix domain (HTH_31)

(5-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis 05ZYH33

92.977

100

0.93
  comR Streptococcus suis P1/7

92.977

100

0.93
  comR Streptococcus suis D9

61.13

100

0.615
  comR Streptococcus mutans UA159

45.485

100

0.455
  comR Streptococcus pyogenes MGAS315

37.374

99.331

0.371