Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WF513_RS02500 Genome accession   NZ_CP149803
Coordinates   515738..516229 (+) Length   163 a.a.
NCBI ID   WP_339081158.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 510738..521229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WF513_RS02485 (WF513_02485) bfr 510806..511270 (+) 465 WP_339081155.1 bacterioferritin -
  WF513_RS02490 (WF513_02490) uvrA 511363..514197 (-) 2835 WP_339081156.1 excinuclease ABC subunit UvrA -
  WF513_RS02495 (WF513_02495) - 514332..515720 (+) 1389 WP_339081157.1 MFS transporter -
  WF513_RS02500 (WF513_02500) ssb 515738..516229 (+) 492 WP_339081158.1 single-stranded DNA-binding protein Machinery gene
  WF513_RS02505 (WF513_02505) - 516410..516811 (-) 402 WP_339081159.1 AraC family transcriptional regulator ligand-binding domain-containing protein -
  WF513_RS02510 (WF513_02510) - 517047..517931 (+) 885 WP_339081160.1 sugar nucleotide-binding protein -
  WF513_RS02515 (WF513_02515) - 517924..518856 (+) 933 WP_339081161.1 NAD-dependent epimerase/dehydratase family protein -
  WF513_RS02520 (WF513_02520) - 518912..519595 (-) 684 WP_339081162.1 OmpW family outer membrane protein -
  WF513_RS02525 (WF513_02525) - 519836..520606 (+) 771 WP_339081163.1 DUF3450 domain-containing protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18002.07 Da        Isoelectric Point: 5.3109

>NTDB_id=961450 WF513_RS02500 WP_339081158.1 515738..516229(+) (ssb) [Pseudomonas sp. TMP9]
MARGVNKVILVGTCGQDPETRFLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGVKRYTTEIIVDMQGTMQLLGGRPDNAGGDSAPRQQRPAPQREPQSSAPRPTPQPATQPAADFDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=961450 WF513_RS02500 WP_339081158.1 515738..516229(+) (ssb) [Pseudomonas sp. TMP9]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGACAGGACCCGGAAACTCGCTTCCTGCCCAGCGGTAA
TGCGGTCACCAACCTGAGCCTGGCGACCAGCGAGCAGTGGACCGATAAGCAGACCGGTCAAAAGGTCGAAAAAACCGAGT
GGCACCGCGTATCGCTGTTCGGCAAAGTGGCAGAAATTGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGTAAGCTGCAAACCCGCGAGTGGGAAAAAGACGGTGTGAAGCGTTACACCACCGAAATCATTGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGTCGTCCAGACAATGCCGGCGGTGACTCGGCTCCGCGCCAACAGCGTCCAGCGCCGCAGCGTG
AGCCTCAGTCTTCAGCGCCCCGTCCAACGCCGCAACCCGCGACTCAGCCCGCCGCAGATTTCGACAGCTTTGACGACGAC
ATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.18

100

0.613
  ssb Glaesserella parasuis strain SC1401

46.448

100

0.521
  ssb Neisseria meningitidis MC58

46.369

100

0.509
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.503