Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   WKW51_RS01765 Genome accession   NZ_CP149800
Coordinates   374756..375238 (+) Length   160 a.a.
NCBI ID   WP_001046418.1    Uniprot ID   A0A0J8UYN7
Organism   Acinetobacter baumannii strain AB7276     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369756..380238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW51_RS01755 (WKW51_01755) pilX 370068..370886 (+) 819 WP_000149373.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WKW51_RS01760 (WKW51_01760) pilY1 370898..374743 (+) 3846 WP_188198933.1 PilC/PilY family type IV pilus protein Machinery gene
  WKW51_RS01765 (WKW51_01765) pilY2 374756..375238 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  WKW51_RS01770 (WKW51_01770) pilE 375235..375660 (+) 426 WP_000788341.1 type IV pilin protein Machinery gene
  WKW51_RS01775 (WKW51_01775) rpsP 375807..376058 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  WKW51_RS01780 (WKW51_01780) rimM 376078..376626 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  WKW51_RS01785 (WKW51_01785) trmD 376672..377412 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  WKW51_RS01790 (WKW51_01790) rplS 377620..377988 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  WKW51_RS01795 (WKW51_01795) - 378041..378982 (-) 942 WP_100217485.1 triacylglycerol lipase -
  WKW51_RS01800 (WKW51_01800) - 379097..380128 (-) 1032 WP_001189455.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=961412 WKW51_RS01765 WP_001046418.1 374756..375238(+) (pilY2) [Acinetobacter baumannii strain AB7276]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=961412 WKW51_RS01765 WP_001046418.1 374756..375238(+) (pilY2) [Acinetobacter baumannii strain AB7276]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95.625

100

0.956
  comE Acinetobacter baylyi ADP1

41.279

100

0.444