Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   WKW51_RS01760 Genome accession   NZ_CP149800
Coordinates   370898..374743 (+) Length   1281 a.a.
NCBI ID   WP_188198933.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB7276     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365898..379743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW51_RS01730 (WKW51_01730) gmk 366170..366799 (-) 630 WP_000015937.1 guanylate kinase -
  WKW51_RS01735 (WKW51_01735) ispH 366922..367872 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  WKW51_RS01740 (WKW51_01740) fimU 368042..368515 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  WKW51_RS01745 (WKW51_01745) pilV 368509..369069 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  WKW51_RS01750 (WKW51_01750) pilW 369070..370071 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  WKW51_RS01755 (WKW51_01755) pilX 370068..370886 (+) 819 WP_000149373.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WKW51_RS01760 (WKW51_01760) pilY1 370898..374743 (+) 3846 WP_188198933.1 PilC/PilY family type IV pilus protein Machinery gene
  WKW51_RS01765 (WKW51_01765) pilY2 374756..375238 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  WKW51_RS01770 (WKW51_01770) pilE 375235..375660 (+) 426 WP_000788341.1 type IV pilin protein Machinery gene
  WKW51_RS01775 (WKW51_01775) rpsP 375807..376058 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  WKW51_RS01780 (WKW51_01780) rimM 376078..376626 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  WKW51_RS01785 (WKW51_01785) trmD 376672..377412 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  WKW51_RS01790 (WKW51_01790) rplS 377620..377988 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  WKW51_RS01795 (WKW51_01795) - 378041..378982 (-) 942 WP_100217485.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1281 a.a.        Molecular weight: 137505.08 Da        Isoelectric Point: 7.7527

>NTDB_id=961411 WKW51_RS01760 WP_188198933.1 370898..374743(+) (pilY1) [Acinetobacter baumannii strain AB7276]
MKLKLKNFKPNNLWYAVCSSSMIFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTSNSYGENRLAMLKDGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLRSGGTTPSAHAYAEAAAYLM
GTTTYSETNYAIRKESYIKRVRRFDNKTEYSSCTNSSQIDINTLSQSCRSNGWSSWTTFNPGVNTLTDYETSSDWTYYYT
YYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNATNSNAVYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTRSAS
VMSTALGSTFGADFNCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRT
QSDRKGDDACSPNQSTNAVAAPGYGNGGFFPTQSSQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEYGYL
RAFEPNPANTYLTWRGNLKKYHVVLSGANAGAFEANSGGLVYNASGAFRTGTKDYWNSSTYTDGGKVFLGGSYANVPLPI
AGQPETRDAEGNITKYYYAVQSKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAAPPEGTNPFDTVANTASYVLGKFDP
STGQNILKAFPISLKLKILNYLGYSTDINATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQSILY
GTMEGGLHIVDASSGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVTAKQM
NIYGGMRMGGSSYYGLDVLSPTSPKLLFRIGADQTDYSRMGQSWSKPVLANIRYNGSIRRVLIVGGGYDQCYEKPNITLT
DACFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNTDNANMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRVDLNNNQ
TKTNSTYSSFGVRVVRLANLATNDSTYDGTNDYTGGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLTGRE
GMTPASALSGRPVNNVYGIIDKDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWYRSL
SSTSDGTEKANNSFRIKGGLKAFEEPMAITGNLIIPVYDPQGTGIVAADPCLPRVVGETDRQTYCLPFGACLNPDGTINS
NKENPSGFQTKTGSNCPAGVSECNTNVIGAGIRNITFVPKRDEPPVTNSCGKLQLSGNENGTGEWQCTSHLLPVRWYERY
R

Nucleotide


Download         Length: 3846 bp        

>NTDB_id=961411 WKW51_RS01760 WP_188198933.1 370898..374743(+) (pilY1) [Acinetobacter baumannii strain AB7276]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCGTCTGTTCAAGCTCAATGATATTCACATGGCT
GATGACAAGCTCTGTGGTGCAAGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAGCAATAGTTATGGTGAAAACCGTTTGGCTATGCTTAAAGATGGTATGAATGCT
TTTTTAGCTAGCAATAACCCTGTCTTAAATGATACGCGAGTAGGTTTAGGAAATTTCTCGGCAAATGGTGATAGCCGAAG
TGGACAAATTTTAGTGGCTGCTGCCCCTTTAGGAGATGCGAGTACTTTAAATACGGTAGGCTCACAACGTTATAAATTAA
AACAAGCTGTTGCTAATTTAAGATCAGGGGGCACGACACCTTCAGCCCATGCCTATGCTGAAGCAGCTGCTTACTTAATG
GGAACAACCACATATTCAGAAACGAATTATGCTATTCGTAAAGAGAGTTATATTAAACGTGTAAGAAGATTTGATAATAA
AACTGAATACTCTTCTTGCACTAATTCTTCACAAATTGATATTAATACCTTAAGTCAATCATGTCGTTCTAATGGCTGGA
GTAGCTGGACCACGTTCAATCCAGGAGTAAATACATTAACAGATTATGAGACTTCATCTGACTGGACTTATTACTATACT
TATTACTACACCACTTTTAATTATGCTGTGGCAAATGCAGATAGCGGTATTCCAAAATCTAAATCAAACGATACAGCTAG
CAATCCGAATATTGTTGTAGACCGAAATGCTACTAACTCCAATGCAGTGTATCAGTCACCTTTACCTGCAGTAGCGAATC
GCCAGAGTTGTGATGGACAAGGTATTTACTTCTTATCGGATGGCGAACCGAACAATACAACAAATACACGTTCGGCAAGT
GTCATGTCGACTGCTTTAGGTAGTACTTTTGGAGCTGATTTTAATTGTTCTGGAGGTTTATCTAACACTACGGCAGACTC
TGGTTGGGCTTGTATGGGGGAGTTTGCAAAAAGATTATTTGATAAAACAAAGAACCCTGCCGGAGTTTCTATTCAAACAG
CATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTGAGTTCTTCTGATGTAAAAAATGCCTGCCGTTTAAGTTCGAGAACC
CAGTCTGACCGAAAAGGAGATGATGCGTGTTCACCGAATCAATCTACAAATGCGGTAGCTGCACCAGGTTATGGGAATGG
TGGTTTTTTCCCTACTCAAAGTTCACAAGGCGTAACAGACAGCGTTATTGCATTTATTAATAATTTAGATAAAGTTCCTC
TAGAACCCTTAACCACAGGTGCTATTTCAGTTCCTTATGATGCATTGAATCCCAAAAATTTACAGGAATATGGTTATTTA
CGAGCTTTTGAGCCAAATCCAGCTAACACGTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGTTTTATCTGG
AGCGAATGCAGGTGCTTTTGAGGCCAATTCTGGCGGATTAGTCTACAATGCAAGTGGGGCTTTTAGGACTGGAACAAAGG
ATTATTGGAATAGCTCTACTTATACTGACGGAGGCAAAGTCTTTTTAGGTGGTTCATATGCGAATGTGCCTTTACCCATT
GCTGGACAACCTGAAACACGTGATGCAGAAGGGAATATCACAAAATATTATTACGCAGTACAAAGTAAAATCCGCAACTT
ATTTACTGATGTTTCCGCCGTTGCAGCAGATGGTAGCTTAACGAAAATTTCAACTTCTGGAACTAATTTGCTAAAAATTC
CAGCTGCTCCACCAGAAGGAACTAATCCTTTTGATACGGTGGCTAATACAGCAAGTTATGTTTTAGGTAAATTTGATCCA
TCAACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGCTTGAAATTAAAAATATTAAATTATTTAGGTTATTCAACAGA
TATTAATGCAACAACTCTGCCTTCATCTTTGGTTACATCGAATGAACCTTATTTATCGATGGGGGGAAGTATTCACTCTT
TACCGGTTCAACTAACCTACAATGGAACACTAGATGATAATGGGAATTTAACATCTGCCCGAGAACAATCCATCCTCTAT
GGAACTATGGAAGGCGGATTACATATTGTGGATGCTTCATCTGGTATTGAGCAAATGGTCTTTGTTCCTGCAGATATTTT
AAATGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCAAAGTGATGCTTCAGCTCCCGCTCATGGTATGGACGGAGCTT
GGGTATCTGATCCAGCCTATAATATTACTACAGTGGGAAGTGGTAGCTCGGCAGTATCAAAAGTAACTGCAAAGCAAATG
AATATTTATGGCGGCATGCGCATGGGGGGAAGTAGCTACTACGGACTAGATGTATTAAGCCCTACTTCACCGAAACTGCT
TTTTAGAATAGGGGCAGACCAGACTGACTATAGCCGTATGGGGCAAAGCTGGTCTAAACCCGTACTCGCGAACATCCGTT
ATAACGGTTCTATTAGACGCGTCCTGATTGTTGGCGGTGGTTATGATCAGTGTTATGAAAAACCAAATATTACGTTGACT
GACGCTTGCTTTACCAATGGAAAAGCAAAAGGAAACGCTGTCTATATTATTGACGCAAAAACTGGTCAGCGTTTGTGGTG
GACAAGTGATACAGGTTCTAATACTGATAACGCCAATATGAAGCATAGTATTGTTAGCCGTATTAGTACTTTAGACCGTG
ATGCTGATGGCTTAGTCGACCATCTATATTTTGGAGATTTAGGCGGACAAATTTTTCGCGTGGACCTTAATAATAATCAG
ACAAAAACCAATTCGACCTATAGCAGTTTTGGTGTCAGAGTTGTGCGTTTAGCGAATTTAGCAACAAATGATTCAACTTA
TGATGGCACAAATGATTATACAGGTGGGAATGCTCCTCGTTTTTATGAGCCCCCAACAGTAACGATCCACGATTATGGAA
TTCACACTTTTATTACAGTAGGTATTGCATCAGGAGACCGTAGTACACCTTTAGACGTTTACCCACTCACAGGTCGTGAA
GGTATGACGCCTGCAAGTGCATTAAGTGGACGTCCTGTAAATAATGTATATGGAATTATTGATAAAGACTTTGTTAAAAA
GAACTTAATGTCTTTAACTGATAATCAGCTTGAAACAAAAGATATTACACGGACAGGCTTAAGAAAAAATCCACAAATTC
TAAGAACAGGTGAAACAAGAGTAGCTCAAATTTTCTTCCCCACTACAGGAGTAGGTAAAGGTGGTTGGTATCGCTCGCTT
TCTAGTACGAGCGATGGTACAGAAAAAGCTAATAATAGTTTTCGTATTAAAGGAGGACTCAAAGCTTTTGAGGAACCAAT
GGCAATTACGGGTAATTTAATTATTCCAGTTTATGACCCTCAAGGAACGGGAATTGTTGCGGCAGATCCTTGTCTACCTC
GTGTTGTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGTGCTTGTCTTAATCCGGATGGAACCATTAATTCA
AATAAAGAAAACCCGAGCGGGTTTCAAACAAAAACTGGTAGTAACTGTCCAGCTGGAGTCTCTGAATGTAATACAAATGT
CATTGGTGCAGGTATTCGTAATATCACATTTGTTCCAAAAAGAGATGAACCTCCTGTGACTAATAGTTGTGGGAAATTAC
AGCTGTCTGGAAACGAGAACGGAACAGGTGAGTGGCAATGTACAAGTCATTTACTTCCTGTGCGCTGGTATGAGCGCTAT
CGCTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(712-961)

von Willebrand factor type A domain (VWA_2)

(51-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

88.733

100

0.891