Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   WKW51_RS01755 Genome accession   NZ_CP149800
Coordinates   370068..370886 (+) Length   272 a.a.
NCBI ID   WP_000149373.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB7276     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365068..375886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW51_RS01720 (WKW51_01720) - 365650..365780 (-) 131 Protein_330 hypothetical protein -
  WKW51_RS01725 (WKW51_01725) rpoZ 365819..366097 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  WKW51_RS01730 (WKW51_01730) gmk 366170..366799 (-) 630 WP_000015937.1 guanylate kinase -
  WKW51_RS01735 (WKW51_01735) ispH 366922..367872 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  WKW51_RS01740 (WKW51_01740) fimU 368042..368515 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  WKW51_RS01745 (WKW51_01745) pilV 368509..369069 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  WKW51_RS01750 (WKW51_01750) pilW 369070..370071 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  WKW51_RS01755 (WKW51_01755) pilX 370068..370886 (+) 819 WP_000149373.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  WKW51_RS01760 (WKW51_01760) pilY1 370898..374743 (+) 3846 WP_188198933.1 PilC/PilY family type IV pilus protein Machinery gene
  WKW51_RS01765 (WKW51_01765) pilY2 374756..375238 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  WKW51_RS01770 (WKW51_01770) pilE 375235..375660 (+) 426 WP_000788341.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28845.66 Da        Isoelectric Point: 5.6905

>NTDB_id=961410 WKW51_RS01755 WP_000149373.1 370068..370886(+) (pilX) [Acinetobacter baumannii strain AB7276]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLENLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=961410 WKW51_RS01755 WP_000149373.1 370068..370886(+) (pilX) [Acinetobacter baumannii strain AB7276]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAAATC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.632

100

0.996