Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WKI52_RS02360 Genome accession   NZ_CP149646
Coordinates   457553..458242 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain MJ06     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 452553..463242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI52_RS02325 (WKI52_02325) - 452751..453233 (-) 483 WP_022553865.1 flagellar protein FlgN -
  WKI52_RS02330 (WKI52_02330) flgM 453248..453514 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  WKI52_RS02335 (WKI52_02335) - 453584..454003 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  WKI52_RS02340 (WKI52_02340) comFC 454077..454766 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  WKI52_RS02345 (WKI52_02345) - 454772..455056 (-) 285 WP_022553866.1 competence protein ComFB -
  WKI52_RS02350 (WKI52_02350) comFA 455114..456499 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  WKI52_RS02355 (WKI52_02355) - 456607..457455 (-) 849 WP_003151387.1 DegV family protein -
  WKI52_RS02360 (WKI52_02360) degU 457553..458242 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WKI52_RS02365 (WKI52_02365) degS 458319..459482 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  WKI52_RS02370 (WKI52_02370) - 459705..460352 (+) 648 WP_060657503.1 YigZ family protein -
  WKI52_RS02375 (WKI52_02375) - 460357..461550 (+) 1194 WP_128974134.1 LCP family protein -
  WKI52_RS02380 (WKI52_02380) - 461650..462726 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=960181 WKI52_RS02360 WP_003219701.1 457553..458242(-) (degU) [Bacillus velezensis strain MJ06]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=960181 WKI52_RS02360 WP_003219701.1 457553..458242(-) (degU) [Bacillus velezensis strain MJ06]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1