Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WKI52_RS02340 Genome accession   NZ_CP149646
Coordinates   454077..454766 (-) Length   229 a.a.
NCBI ID   WP_199803302.1    Uniprot ID   -
Organism   Bacillus velezensis strain MJ06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449077..459766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI52_RS02305 (WKI52_02305) fliW 449168..449599 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  WKI52_RS02310 (WKI52_02310) - 449629..450198 (-) 570 WP_017418818.1 DUF6470 family protein -
  WKI52_RS02315 (WKI52_02315) flgL 450289..451206 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  WKI52_RS02320 (WKI52_02320) flgK 451218..452735 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  WKI52_RS02325 (WKI52_02325) - 452751..453233 (-) 483 WP_022553865.1 flagellar protein FlgN -
  WKI52_RS02330 (WKI52_02330) flgM 453248..453514 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  WKI52_RS02335 (WKI52_02335) - 453584..454003 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  WKI52_RS02340 (WKI52_02340) comFC 454077..454766 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  WKI52_RS02345 (WKI52_02345) - 454772..455056 (-) 285 WP_022553866.1 competence protein ComFB -
  WKI52_RS02350 (WKI52_02350) comFA 455114..456499 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  WKI52_RS02355 (WKI52_02355) - 456607..457455 (-) 849 WP_003151387.1 DegV family protein -
  WKI52_RS02360 (WKI52_02360) degU 457553..458242 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WKI52_RS02365 (WKI52_02365) degS 458319..459482 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=960179 WKI52_RS02340 WP_199803302.1 454077..454766(-) (comFC) [Bacillus velezensis strain MJ06]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=960179 WKI52_RS02340 WP_199803302.1 454077..454766(-) (comFC) [Bacillus velezensis strain MJ06]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594