Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQM41_RS06625 Genome accession   NZ_CP149625
Coordinates   1358241..1358798 (-) Length   185 a.a.
NCBI ID   WP_339078048.1    Uniprot ID   -
Organism   Acetobacter sp. AC2005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1353241..1363798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM41_RS06600 (QQM41_06600) - 1354424..1354801 (+) 378 WP_339078045.1 hypothetical protein -
  QQM41_RS06605 (QQM41_06605) - 1354927..1356018 (+) 1092 WP_339078046.1 glycosyltransferase family 4 protein -
  QQM41_RS06615 (QQM41_06615) dksA 1356276..1356689 (-) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  QQM41_RS06620 (QQM41_06620) - 1356905..1358179 (-) 1275 WP_339078047.1 O-antigen ligase family protein -
  QQM41_RS06625 (QQM41_06625) ssb 1358241..1358798 (-) 558 WP_339078048.1 single-stranded DNA-binding protein Machinery gene
  QQM41_RS06630 (QQM41_06630) rsmD 1358876..1359460 (-) 585 WP_339078049.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QQM41_RS06635 (QQM41_06635) - 1359460..1360236 (-) 777 WP_003626510.1 pseudouridine synthase -
  QQM41_RS06640 (QQM41_06640) - 1360233..1360964 (-) 732 WP_339078050.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  QQM41_RS06645 (QQM41_06645) - 1361090..1361242 (-) 153 WP_003626506.1 hypothetical protein -
  QQM41_RS06650 (QQM41_06650) - 1361463..1361918 (+) 456 WP_339078051.1 nucleoside deaminase -
  QQM41_RS06655 (QQM41_06655) - 1362094..1363662 (+) 1569 WP_339078052.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19798.47 Da        Isoelectric Point: 5.3755

>NTDB_id=960097 QQM41_RS06625 WP_339078048.1 1358241..1358798(-) (ssb) [Acetobacter sp. AC2005]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADIAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSGEGESEGGGFGGGSGSSYGGYNSGGSGYGAPSSAPRQQPAQ
RSGGNSSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=960097 QQM41_RS06625 WP_339078048.1 1358241..1358798(-) (ssb) [Acetobacter sp. AC2005]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTTCCAGCCAGAGCGGTGC
AAAAATTGTTTCCTTCTCTCTGGCCACCAGTGACACATGGAATGACCGCGCATCTGGTGAACGACGTGAACGCACAGAAT
GGCATCGCGTGGTCATTTTCAATGAACGTCTGGCAGATATAGCCGAACGTTTCCTGCGCAAAGGCCGCAAAGTTTATCTG
GAAGGCTCCCTGCAAACCCGTAAATGGACAGATCAGGGTGGGCAGGAACGCTATACAACGGAAGTGATTATTGACCGTTT
CCGTGGTGAGCTGGTGCTGCTGGATAGCCGCAATAGTGGCGAAGGCGAAAGTGAAGGCGGCGGCTTTGGTGGCGGAAGCG
GCAGCAGCTACGGTGGTTATAACAGTGGCGGCAGTGGTTATGGCGCCCCATCATCCGCTCCACGCCAGCAACCAGCACAA
CGCAGCGGTGGCAATAGCTCCGGCGGCTGGGATGCATCTGGCGGCAACGGCGATCTTGATGACGAAATCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.97

100

0.503
  ssb Vibrio cholerae strain A1552

43.478

99.459

0.432
  ssb Neisseria meningitidis MC58

39.011

98.378

0.384
  ssb Neisseria gonorrhoeae MS11

38.462

98.378

0.378