Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHL52_RS22065 Genome accession   NZ_CP149576
Coordinates   4194135..4194653 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain DSM 10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4189135..4199653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS22035 yyaJ 4189638..4190993 (+) 1356 WP_003243011.1 MFS transporter -
  WHL52_RS22040 maa 4191027..4191581 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WHL52_RS22045 yyaH 4191599..4191979 (-) 381 WP_003244460.1 VOC family protein -
  WHL52_RS22050 ccpB 4192035..4192970 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHL52_RS22055 xth 4193029..4193787 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHL52_RS22060 rpsR 4193852..4194091 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHL52_RS22065 ssbA 4194135..4194653 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHL52_RS22070 rpsF 4194694..4194981 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHL52_RS22075 ychF 4195092..4196192 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHL52_RS22080 yyaE 4196319..4198322 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHL52_RS22085 yyzM 4198373..4198579 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=960010 WHL52_RS22065 WP_003219228.1 4194135..4194653(-) (ssbA) [Bacillus subtilis strain DSM 10]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=960010 WHL52_RS22065 WP_003219228.1 4194135..4194653(-) (ssbA) [Bacillus subtilis strain DSM 10]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378