Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WE862_RS06500 Genome accession   NZ_CP149571
Coordinates   1342458..1343036 (-) Length   192 a.a.
NCBI ID   WP_033116044.1    Uniprot ID   A0AAQ0J003
Organism   Aeromonas jandaei strain DSM 7311     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1337458..1348036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WE862_RS06475 (WE862_06475) - 1337964..1339322 (-) 1359 WP_042032197.1 NCS2 family permease -
  WE862_RS06480 (WE862_06480) - 1339595..1339804 (-) 210 WP_156854046.1 cold-shock protein -
  WE862_RS06485 (WE862_06485) yjbD 1340307..1340591 (-) 285 WP_042032196.1 DUF3811 domain-containing protein -
  WE862_RS06490 (WE862_06490) - 1340735..1341637 (-) 903 WP_042032195.1 cation diffusion facilitator family transporter -
  WE862_RS06495 (WE862_06495) - 1342104..1342229 (+) 126 WP_019445191.1 hypothetical protein -
  WE862_RS06500 (WE862_06500) ssb 1342458..1343036 (-) 579 WP_033116044.1 single-stranded DNA-binding protein Machinery gene
  WE862_RS06505 (WE862_06505) uvrA 1343407..1346235 (+) 2829 WP_339058714.1 excinuclease ABC subunit UvrA -
  WE862_RS06510 (WE862_06510) - 1346305..1346703 (+) 399 WP_339058715.1 CHASE4 domain-containing protein -
  WE862_RS06515 (WE862_06515) - 1346853..1348019 (+) 1167 WP_339058716.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21259.77 Da        Isoelectric Point: 5.9301

>NTDB_id=959892 WE862_RS06500 WP_033116044.1 1342458..1343036(-) (ssb) [Aeromonas jandaei strain DSM 7311]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQQGGWGQPQQAMQQPMNQQRPAAAPQQNMQ
QQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=959892 WE862_RS06500 WP_033116044.1 1342458..1343036(-) (ssb) [Aeromonas jandaei strain DSM 7311]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTTTATGTC
GAAGGCAAACTGCAGACTCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACGGAAGTACTGGTCGACAGCTT
CACCGGTGTCATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAGCAAGGTG
GCTGGGGTCAACCGCAGCAAGCCATGCAGCAGCCGATGAACCAGCAGCGTCCGGCCGCCGCTCCGCAGCAAAACATGCAG
CAGCAGGGTGGCTACGGCCGTCCGGCTCAGCAGCCCCAGTCTGCCCCGCCGGTCTACAACGAGCCGCCGATGGATTTCGA
CGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.192

100

0.714
  ssb Glaesserella parasuis strain SC1401

54.974

99.479

0.547
  ssb Neisseria gonorrhoeae MS11

47.619

98.438

0.469
  ssb Neisseria meningitidis MC58

47.09

98.438

0.464