Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ACI3MO_RS10225 Genome accession   NZ_CP173480
Coordinates   2068567..2069805 (-) Length   412 a.a.
NCBI ID   WP_404998539.1    Uniprot ID   -
Organism   Escherichia coli strain 98222     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2063567..2074805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MO_RS10205 (ACI3MO_10205) dam 2064179..2065015 (-) 837 WP_000742141.1 adenine-specific DNA-methyltransferase -
  ACI3MO_RS10210 (ACI3MO_10210) damX 2065122..2066408 (-) 1287 WP_021523282.1 cell division protein DamX -
  ACI3MO_RS10215 (ACI3MO_10215) aroB 2066500..2067588 (-) 1089 WP_020232886.1 3-dehydroquinate synthase -
  ACI3MO_RS10220 (ACI3MO_10220) aroK 2067645..2068166 (-) 522 WP_000818618.1 shikimate kinase AroK -
  ACI3MO_RS10225 (ACI3MO_10225) comE 2068567..2069805 (-) 1239 WP_404998539.1 DNA uptake porin HofQ Machinery gene
  ACI3MO_RS10230 (ACI3MO_10230) hofP 2069717..2070121 (-) 405 WP_001521465.1 DNA utilization protein HofP -
  ACI3MO_RS10235 (ACI3MO_10235) hofO 2070111..2070551 (-) 441 WP_000367366.1 DNA utilization protein HofO -
  ACI3MO_RS10240 (ACI3MO_10240) hofN 2070535..2071074 (-) 540 WP_001069323.1 DNA utilization protein HofN -
  ACI3MO_RS10245 (ACI3MO_10245) hofM 2071074..2071853 (-) 780 WP_001445781.1 DNA utilization protein HofM -
  ACI3MO_RS10250 (ACI3MO_10250) mrcA 2071973..2074525 (+) 2553 WP_001301905.1 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44725.20 Da        Isoelectric Point: 5.9488

>NTDB_id=959635 ACI3MO_RS10225 WP_404998539.1 2068567..2069805(-) (comE) [Escherichia coli strain 98222]
MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGL
ITRQEGNILSVHSIAWQNDNIARQEAEQARAQANLSLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN
KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHVGFNIGRIN
GRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL
HISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERREL
VVFITPRLVSSE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=959635 ACI3MO_RS10225 WP_404998539.1 2068567..2069805(-) (comE) [Escherichia coli strain 98222]
ATGAAGCAATGGATAGCCGCACTACTGTTGATGCTGATACCCGGCGTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGAT
GGTGGATGACGTTCCGGTAGCTCAGGTGTTGCAGGCGCTGGCTGAACAGGAGAAGTTGAACCTGGTGGTGTCGCCAGACG
TCAGCGGTACGGTGTCGTTACATCTAACAGATGTTCCCTGGAAGCAAGCACTACAAACTGTAGTGAAAAGCGCCGGACTG
ATAACGCGTCAGGAGGGCAACATTCTCTCAGTGCATTCCATTGCCTGGCAGAATGACAATATCGCCCGTCAGGAAGCGGA
GCAGGCGCGGGCGCAGGCAAATCTGTCGCTGGAAAATCGCAATATTACTCTGCAATACGCCGACGCCGGAGAGCTGGCGA
AAGCTGGGGAGAAGCTACTGAGTGCCAAAGGGAGTATGACCGTCGATAAACGCACCAATCGCCTTTTGCTGCGAGATAAC
AAAACGGCGTTAAGCGCCCTTGAACAGTGGGTAGCGCAAATGGATCTGCCGGTCGGGCAGGTTGAGCTGTCGGCGCATAT
TGTCACCATTAATGAAAAAAGTTTGCGTGAGTTAGGCGTGAAATGGACGCTGGCCGATGCGCAACAAGCTGGTGGCGTTG
GGCAAGTCACCACGCTTGGCAGCGACCTCTCCGTAGCGACGGCGACAACGCATGTCGGTTTTAACATTGGACGCATCAAC
GGACGTTTACTGGATCTTGAGCTTTCCGCGCTCGAACAAAAACAGCAGCTGGATATTATCGCCAGTCCGCGTCTGCTTGC
CTCACATCTTCAGCCTGCCAGCATTAAACAGGGGAGCGAAATTCCATATCAGGTTTCCAGCGGGGAAAGTGGCGCGACGT
CGGTGGAATTTAAAGAGGCCGTCCTGGGGATGGAAGTTACGCCCACGGTGTTACAAAAAGGTCGCATCCGGCTGAAATTA
CACATCAGCCAGAACGTTCCGGGGCAGGTGCTACAGCAGGCCGATGGCGAAGTGTTGGCGATTGATAAGCAGGAGATCGA
AACGCAGGTCGAGGTCAAAAGCGGAGAAACGTTGGCGCTGGGCGGCATTTTTACCCGTAAAAATAAATCGGGTCAGGATA
GCGTACCGTTGCTTGGCGACATTCCCTGGTTCGGGCAATTATTTCGTCATGACGGAAAAGAAGATGAACGACGCGAGTTA
GTGGTGTTTATCACGCCACGACTGGTTTCCAGTGAGTAA

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(120-179)

Bacterial type II and III secretion system protein (Secretin)

(250-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

36.591

100

0.391
  pilQ Vibrio campbellii strain DS40M4

38.242

100

0.391
  comE Haemophilus influenzae 86-028NP

36.364

100

0.388
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.772

100

0.379
  pilQ Vibrio cholerae strain A1552

37.772

100

0.379
  comE Glaesserella parasuis strain SC1401

35.476

100

0.362