Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   ACIVIR_RS02045 Genome accession   NZ_CP173225
Coordinates   378446..378682 (+) Length   78 a.a.
NCBI ID   WP_000939545.1    Uniprot ID   A0A0H2ZMA7
Organism   Streptococcus pneumoniae strain 262     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 373446..383682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVIR_RS02040 - 377383..378180 (-) 798 Protein_353 transposase -
  ACIVIR_RS02045 comW 378446..378682 (+) 237 WP_000939545.1 sigma(X)-activator ComW Regulator
  ACIVIR_RS02050 - 378913..380199 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  ACIVIR_RS02055 - 380441..381589 (-) 1149 WP_000876732.1 site-specific integrase -
  ACIVIR_RS02060 - 381775..382698 (-) 924 WP_000122591.1 exonuclease domain-containing protein -
  ACIVIR_RS02065 - 382711..383094 (-) 384 WP_001865140.1 ImmA/IrrE family metallo-endopeptidase -
  ACIVIR_RS02070 - 383107..383472 (-) 366 WP_000492031.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9658.13 Da        Isoelectric Point: 6.7051

>NTDB_id=957219 ACIVIR_RS02045 WP_000939545.1 378446..378682(+) (comW) [Streptococcus pneumoniae strain 262]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=957219 ACIVIR_RS02045 WP_000939545.1 378446..378682(+) (comW) [Streptococcus pneumoniae strain 262]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZMA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

100

100

1
  comW Streptococcus pneumoniae D39

100

100

1
  comW Streptococcus pneumoniae R6

100

100

1
  comW Streptococcus pneumoniae TIGR4

100

100

1
  comW Streptococcus mitis SK321

75.641

100

0.756
  comW Streptococcus mitis NCTC 12261

75.325

98.718

0.744