Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WJM78_RS02690 Genome accession   NZ_CP149129
Coordinates   562895..563479 (-) Length   194 a.a.
NCBI ID   WP_212513964.1    Uniprot ID   -
Organism   Aeromonas popoffii strain BE5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 539347..568740 562895..563479 within 0


Gene organization within MGE regions


Location: 539347..568740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM78_RS02580 - 539347..540543 (+) 1197 WP_339013319.1 hypothetical protein -
  WJM78_RS02585 - 540535..541242 (-) 708 WP_339013322.1 hypothetical protein -
  WJM78_RS02590 - 541335..542084 (+) 750 WP_339013325.1 metallophosphoesterase -
  WJM78_RS02595 - 542142..543467 (+) 1326 WP_339013327.1 hypothetical protein -
  WJM78_RS02600 - 543758..544858 (+) 1101 WP_339013330.1 PIN domain-containing protein -
  WJM78_RS02605 - 544860..545819 (+) 960 WP_339013332.1 bacteriophage abortive infection AbiH family protein -
  WJM78_RS02610 - 546458..546913 (-) 456 WP_339013335.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  WJM78_RS02615 - 547022..547213 (+) 192 WP_042032933.1 hypothetical protein -
  WJM78_RS02620 - 547848..548255 (+) 408 WP_339013339.1 H-NS family nucleoid-associated regulatory protein -
  WJM78_RS02625 - 548317..548577 (+) 261 WP_339013342.1 hypothetical protein -
  WJM78_RS02630 - 548653..549480 (-) 828 WP_339015723.1 Fic family protein -
  WJM78_RS02635 - 549547..549780 (-) 234 Protein_500 DUF4172 domain-containing protein -
  WJM78_RS02640 - 550381..551484 (-) 1104 WP_339013345.1 DUF3289 family protein -
  WJM78_RS02645 - 552038..553468 (-) 1431 WP_339013347.1 hypothetical protein -
  WJM78_RS02650 - 553863..554069 (-) 207 WP_260750597.1 helix-turn-helix transcriptional regulator -
  WJM78_RS02655 - 554188..554754 (+) 567 WP_339013353.1 hypothetical protein -
  WJM78_RS02660 - 554813..557062 (-) 2250 WP_339013356.1 AAA family ATPase -
  WJM78_RS02665 - 557059..557565 (-) 507 WP_125602535.1 hypothetical protein -
  WJM78_RS02670 - 557562..557981 (-) 420 WP_005895563.1 hypothetical protein -
  WJM78_RS02675 - 557978..560041 (-) 2064 WP_339013361.1 integrase -
  WJM78_RS02680 - 560038..561519 (-) 1482 WP_265458671.1 site-specific integrase -
  WJM78_RS02685 - 561541..562713 (-) 1173 WP_339013365.1 site-specific integrase -
  WJM78_RS02690 ssb 562895..563479 (-) 585 WP_212513964.1 single-stranded DNA-binding protein Machinery gene
  WJM78_RS02695 - 564011..564670 (+) 660 WP_042039303.1 LuxR C-terminal-related transcriptional regulator -
  WJM78_RS02700 uvrA 564765..567605 (+) 2841 WP_275931176.1 excinuclease ABC subunit UvrA -
  WJM78_RS02705 - 567738..567983 (+) 246 Protein_514 diguanylate cyclase -
  WJM78_RS02710 - 568046..568740 (+) 695 WP_339013369.1 IS1 family transposase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21347.86 Da        Isoelectric Point: 5.9301

>NTDB_id=956730 WJM78_RS02690 WP_212513964.1 562895..563479(-) (ssb) [Aeromonas popoffii strain BE5]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFSGVMQMLGGRPQGGAGQNMGGQPQGNWGQPQQGMPAQQPMNQARPAAAPQQNM
QPPQGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=956730 WJM78_RS02690 WP_212513964.1 562895..563479(-) (ssb) [Aeromonas popoffii strain BE5]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGACAAGACCCGGAAGTGCGCTACATGCCGAGTGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGCGAACAGAAAGAGCGTACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCAGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTC
GAAGGGAAACTGCAGACCCGCAAGTGGCAGGATCAGAGCGGCCAAGAGCGCTACACCACCGAGGTGCTGGTAGACAGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGTGGCGCCGGTCAGAACATGGGTGGCCAACCCCAAGGCAACT
GGGGTCAGCCACAACAAGGCATGCCCGCCCAGCAGCCAATGAACCAGGCCCGTCCTGCCGCCGCGCCGCAGCAGAACATG
CAGCCGCCGCAAGGTGGATACAGCCGTCCGGCCCAGCAGCCCCAGTCTGCACCGCCGGTATATAACGAGCCGCCGATGGA
TTTCGACGACGACATCCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.342

100

0.701
  ssb Glaesserella parasuis strain SC1401

53.927

98.454

0.531
  ssb Neisseria meningitidis MC58

47.917

98.969

0.474
  ssb Neisseria gonorrhoeae MS11

47.396

98.969

0.469