Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   AABA14_RS00115 Genome accession   NZ_AP028607
Coordinates   22173..22409 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 17173..27409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS00105 - 20238..21076 (+) 839 Protein_14 IS630 family transposase -
  AABA14_RS00110 - 21136..21908 (-) 773 Protein_15 transposase -
  AABA14_RS00115 (TKY123642_00150) comW 22173..22409 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  AABA14_RS00120 (TKY123642_00160) - 22640..23926 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  AABA14_RS00125 (TKY123642_00170) - 24168..25316 (-) 1149 WP_000876735.1 site-specific integrase -
  AABA14_RS00130 (TKY123642_00180) - 25488..26402 (-) 915 WP_317680939.1 HIRAN domain-containing protein -
  AABA14_RS00135 (TKY123642_00190) - 26415..27149 (-) 735 WP_001100508.1 S24 family peptidase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=95671 AABA14_RS00115 WP_000939546.1 22173..22409(+) (comW) [Streptococcus pneumoniae strain Sep2]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=95671 AABA14_RS00115 WP_000939546.1 22173..22409(+) (comW) [Streptococcus pneumoniae strain Sep2]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756