Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACF2JY_RS06020 Genome accession   NZ_CP172966
Coordinates   1187642..1188337 (+) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain cel     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1182642..1193337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS06000 (ACF2JY_06000) folC 1183573..1184865 (+) 1293 WP_046381250.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACF2JY_RS06005 (ACF2JY_06005) comC 1185005..1185751 (+) 747 WP_069704049.1 A24 family peptidase Machinery gene
  ACF2JY_RS06010 (ACF2JY_06010) spoIIB 1185885..1186883 (+) 999 WP_046381249.1 stage II sporulation protein SpoIIB -
  ACF2JY_RS06015 (ACF2JY_06015) maf 1187036..1187605 (+) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  ACF2JY_RS06020 (ACF2JY_06020) ysxA/radC 1187642..1188337 (+) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  ACF2JY_RS06025 (ACF2JY_06025) mreB 1188429..1189442 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACF2JY_RS06030 (ACF2JY_06030) mreC 1189473..1190345 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  ACF2JY_RS06035 (ACF2JY_06035) mreD 1190342..1190860 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  ACF2JY_RS06040 (ACF2JY_06040) minC 1190913..1191593 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  ACF2JY_RS06045 (ACF2JY_06045) minD 1191595..1192401 (+) 807 WP_014664846.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=956093 ACF2JY_RS06020 WP_014480455.1 1187642..1188337(+) (ysxA/radC) [Bacillus subtilis strain cel]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=956093 ACF2JY_RS06020 WP_014480455.1 1187642..1188337(+) (ysxA/radC) [Bacillus subtilis strain cel]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424