Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LGMS210922A_RS00675 Genome accession   NZ_AP026069
Coordinates   138901..139317 (+) Length   138 a.a.
NCBI ID   WP_014024177.1    Uniprot ID   -
Organism   Lactococcus garvieae strain MS210922A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 133901..144317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMS210922A_RS00650 (LGMS210922A_01220) guaB 134733..136214 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  LGMS210922A_RS00655 (LGMS210922A_01230) rpsU 136337..136513 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  LGMS210922A_RS00660 (LGMS210922A_01240) comGA 136700..137644 (+) 945 WP_265150863.1 competence type IV pilus ATPase ComGA Machinery gene
  LGMS210922A_RS00665 (LGMS210922A_01250) comGB 137583..138602 (+) 1020 WP_016171027.1 competence type IV pilus assembly protein ComGB Machinery gene
  LGMS210922A_RS00670 (LGMS210922A_01260) comYC 138621..138926 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  LGMS210922A_RS00675 comGD 138901..139317 (+) 417 WP_014024177.1 competence type IV pilus minor pilin ComGD Machinery gene
  LGMS210922A_RS00680 comGE 139349..139582 (+) 234 WP_229031266.1 competence type IV pilus minor pilin ComGE -
  LGMS210922A_RS00685 (LGMS210922A_01280) comGF 139563..140003 (+) 441 WP_338129529.1 competence type IV pilus minor pilin ComGF -
  LGMS210922A_RS00690 (LGMS210922A_01290) - 140236..141081 (+) 846 WP_023889974.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LGMS210922A_RS00695 (LGMS210922A_01300) - 141167..142036 (-) 870 WP_023889973.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15820.51 Da        Isoelectric Point: 10.0791

>NTDB_id=95609 LGMS210922A_RS00675 WP_014024177.1 138901..139317(+) (comGD) [Lactococcus garvieae strain MS210922A]
MKNVMYRIKALTLLESLLVLFLCSFVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGALYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=95609 LGMS210922A_RS00675 WP_014024177.1 138901..139317(+) (comGD) [Lactococcus garvieae strain MS210922A]
ATGAAAAACGTAATGTACCGAATTAAAGCCTTGACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAGGTTCGGTCAAACAAAGTGTGAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGTCTTT
ATAAGGATACTCAACGCATGGCGGGACTAAAGGGACAGCAACAGACGTTGAGTGCGAGTAATGGTGCACTCTATAGCCAA
GAGGAAATGCTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACAATCTCTTATCAATTGGAGATTGGAAGCGGAAAATATA
AGAAAAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

41.667

95.652

0.399
  comYD Streptococcus mutans UA159

41.667

95.652

0.399
  comGD/cglD Streptococcus mitis SK321

40.31

93.478

0.377
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362

Multiple sequence alignment