Detailed information NTG0095605

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: LGMS210922A_RS00380
• Genome accession: NZ_AP026069
• Coordinates: 78996..79787 (+)
• Length: 263 a.a.
• NCBI ID: WP_003133634.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain MS210922A
• Function: repress the expression of comX (predicted from homology) Competence regulation

Genomic Context

Location: 73996..84787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGMS210922A_RS00350 (LGMS210922A_00600)	rpmH	74693..74827 (+)	135	WP_003135255.1	50S ribosomal protein L34	-
LGMS210922A_RS00355 (LGMS210922A_00610)	-	74977..75888 (+)	912	WP_165705473.1	aldo/keto reductase	-
LGMS210922A_RS00360 (LGMS210922A_00620)	-	76089..76355 (+)	267	WP_003133629.1	IreB family regulatory phosphoprotein	-
LGMS210922A_RS00365 (LGMS210922A_00630)	ruvX	76355..76783 (+)	429	WP_003133630.1	Holliday junction resolvase RuvX	-
LGMS210922A_RS00370 (LGMS210922A_00640)	-	76798..77121 (+)	324	WP_003133632.1	DUF1292 domain-containing protein	-
LGMS210922A_RS00375 (LGMS210922A_00650)	-	77261..78859 (+)	1599	WP_265149915.1	glycosyltransferase	-
LGMS210922A_RS00380 (LGMS210922A_00660)	codY	78996..79787 (+)	792	WP_003133634.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
LGMS210922A_RS00385 (LGMS210922A_00670)	gatC	79932..80237 (+)	306	WP_003133635.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	-
LGMS210922A_RS00390 (LGMS210922A_00680)	gatA	80237..81709 (+)	1473	WP_003133636.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	-
LGMS210922A_RS00395 (LGMS210922A_00690)	gatB	81711..83144 (+)	1434	WP_003133637.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	-
LGMS210922A_RS00400 (LGMS210922A_00700)	-	83158..84513 (-)	1356	WP_265149920.1	MATE family efflux transporter	-

Sequence

Protein

• Length: 263 a.a.
• Molecular weight: 29180.60 Da
• Isoelectric Point: 4.7260

>NTDB_id=95605 LGMS210922A_RS00380 WP_003133634.1 78996..79787(+) (codY) [Lactococcus garvieae strain MS210922A]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide

• Length: 792 bp

>NTDB_id=95605 LGMS210922A_RS00380 WP_003133634.1 78996..79787(+) (codY) [Lactococcus garvieae strain MS210922A]
GTGGCTACTTTATTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTGATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACGATTAACGAACCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGCGGTATGCGCTTGGGAACATTTATCTTAT
GGCGTACAGACGGGAAATTCAGTGATGATGACCTTGTGCTTGCAGAACTTGCAACAACAGTTATCGGTGTTCAACTTTCC
AATCTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCCAATATGGCAGTCAATACACTTTCATATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACACGTTATCGCTTCAGTCATTGCCGATA
AGATTGGCATTACCCGTTCAGTAATCGTTAATGCACTGCGTAAGCTTGAATCTGCCGGTGTTATTGAAAGTCGTTCGTTG
GGAATGAAAGGAACTTACCTCAAAGTTCTTAACCAAGGTTTGTTTACAAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (202-259)

• CodY GAF-like domain (CodY) (3-183)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Lactococcus lactis subsp. lactis strain DGCC12653	82.129	100	0.821
codY	Bacillus subtilis subsp. subtilis str. 168	49.609	97.338	0.483