Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OCX61_RS19965 Genome accession   NZ_AP025944
Coordinates   4455722..4457929 (-) Length   735 a.a.
NCBI ID   WP_261941051.1    Uniprot ID   -
Organism   Pseudomonas sp. LRP2-20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4450722..4462929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX61_RS19930 (KMS_R39100) murB 4450791..4451810 (-) 1020 WP_261941047.1 UDP-N-acetylmuramate dehydrogenase -
  OCX61_RS19935 (KMS_R39110) - 4451807..4452271 (-) 465 WP_261941048.1 low molecular weight protein-tyrosine-phosphatase -
  OCX61_RS19940 (KMS_R39120) kdsB 4452271..4453035 (-) 765 WP_261941049.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OCX61_RS19945 (KMS_R39130) - 4453032..4453217 (-) 186 WP_003247142.1 Trm112 family protein -
  OCX61_RS19950 (KMS_R39140) lpxK 4453261..4454262 (-) 1002 WP_261941050.1 tetraacyldisaccharide 4'-kinase -
  OCX61_RS19955 (KMS_R39150) - 4454262..4454696 (-) 435 WP_085675533.1 ExbD/TolR family protein -
  OCX61_RS19960 (KMS_R39160) exbB 4454693..4455328 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OCX61_RS19965 (KMS_R39170) comA 4455722..4457929 (-) 2208 WP_261941051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCX61_RS19970 (KMS_R39180) - 4458072..4458698 (+) 627 WP_261941052.1 DUF2062 domain-containing protein -
  OCX61_RS19975 (KMS_R39190) - 4458582..4459361 (-) 780 WP_085675531.1 ABC transporter permease -
  OCX61_RS19980 (KMS_R39200) - 4459358..4460290 (-) 933 WP_261941053.1 ABC transporter ATP-binding protein -
  OCX61_RS19985 (KMS_R39210) - 4460424..4461047 (-) 624 WP_261941054.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79479.60 Da        Isoelectric Point: 10.5955

>NTDB_id=95597 OCX61_RS19965 WP_261941051.1 4455722..4457929(-) (comA) [Pseudomonas sp. LRP2-20]
MRTGMFALALGLLCLGVLPVLPSVGWLLLLVLVGGVCACSRLWPLGCFLLGLCWACWSAQQALDDRLSAQLDGRTLWLEG
RVVGLPARTAQGVRFELEQPHSRRAELPQRLQLSWFDGPVIHAGEHWRVAVTLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGQVLQAQARGWRDALRERLLQADAFGQEAALVALVLGDGAGLAREQWQVLQATGTVHLLVISGQHIGLVAGLLYAL
VAGLARSGLWPRRWPWLPWACSLALAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRQLGAMFPLLLALNLVLLAEPL
AALLPGFWLSFAAVAILIYSFAARLGGWRPWQAWTRAQWVIAVGLLPVLLVTGLPVSLSAPVANLLAVPWVSLAVLPLAL
LGTLLLPLAGVGEGLLWVAGGLLDILFRLLALLAGWRPAWIPPALPVVAWLLVCAGALLLLLPRGVPLRGLGGVMLLALW
VPRDTLPLGQVEVWQLDVGQGLAMLLRTRHHTLLFDAGPAKGETDLGERVVLPTLRKLGVGRLDLMLISHAHADHAGGAA
AILRGLPVGRVIGGEALSGVQLQPCSSGERWTWDGVHFSLWRWEDGQSSNDRSCVLMVEARGERLLLAGDMEAGAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFIRATIPRGVLISRGRNNSFGHPHAQVVERYRRHGVVVYDTAVEGALRLVMGGHG
SVESVGRQRRFWRGK

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=95597 OCX61_RS19965 WP_261941051.1 4455722..4457929(-) (comA) [Pseudomonas sp. LRP2-20]
ATGCGCACAGGGATGTTCGCGCTCGCGCTCGGGCTTTTGTGCCTGGGCGTTCTCCCCGTTTTGCCGTCGGTCGGCTGGCT
GCTACTGCTGGTGCTGGTCGGCGGCGTCTGCGCCTGCTCACGGTTGTGGCCGCTGGGCTGTTTTCTGCTGGGGCTTTGCT
GGGCCTGCTGGTCGGCCCAGCAGGCGCTGGATGATCGCCTGAGCGCGCAGCTGGATGGTCGCACTTTATGGCTGGAGGGC
CGGGTCGTCGGGTTGCCGGCGCGTACCGCACAGGGCGTGCGCTTCGAGCTGGAGCAGCCGCATTCGCGTCGAGCCGAGCT
GCCGCAGCGTCTGCAGTTGAGTTGGTTCGATGGCCCGGTCATCCATGCGGGCGAGCATTGGCGCGTGGCCGTCACCTTGC
AGCGCCCGGCCGGGTTGCTGAACCCCCATGGCCCGGATCGCGAGGCTCAGCTGCTGGCCCGGCGCATCGGTGCCACTGGC
ACGGTAAAGGCGGGCCAGGTACTGCAGGCGCAGGCGCGAGGGTGGCGGGATGCGCTGCGCGAACGCCTGCTGCAGGCCGA
TGCCTTTGGCCAGGAAGCTGCACTGGTGGCGTTGGTGCTCGGCGACGGCGCGGGCTTGGCCCGTGAACAGTGGCAGGTAT
TGCAGGCGACCGGCACGGTGCATTTGCTGGTGATTTCCGGGCAACACATCGGCCTCGTCGCGGGCTTGTTGTATGCCTTG
GTCGCAGGTTTGGCGCGCAGTGGGCTTTGGCCGCGACGGTGGCCATGGTTGCCTTGGGCATGCAGCCTGGCACTGGCGGC
GGCGCTGGCCTACGGTTGGCTGGCCGGTGCGGGTGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTGGTGCTGCTGT
GGCGCCTGCGCTTTCGCCAACTGGGGGCGATGTTCCCGCTGCTGCTGGCGTTGAACCTGGTGTTGCTGGCCGAACCCCTG
GCAGCGTTGCTCCCCGGTTTCTGGCTGTCGTTCGCGGCGGTGGCGATCCTCATCTACAGCTTTGCTGCACGACTTGGCGG
TTGGCGACCCTGGCAGGCATGGACGCGGGCCCAATGGGTGATCGCCGTCGGCCTGTTGCCGGTGCTGTTGGTCACGGGGT
TGCCGGTCAGCCTGAGTGCGCCTGTGGCGAATTTGCTGGCGGTACCCTGGGTCAGCCTGGCGGTGTTGCCACTGGCATTG
CTCGGAACGTTGTTGTTACCGCTGGCAGGCGTTGGTGAGGGGTTGCTGTGGGTCGCGGGTGGCTTGCTGGATATCCTGTT
CCGGCTGCTTGCCTTGCTGGCGGGGTGGCGGCCGGCATGGATACCGCCGGCACTGCCGGTGGTGGCCTGGTTGCTGGTGT
GTGCCGGCGCGCTGCTGCTGTTGCTGCCCCGTGGTGTGCCGCTGCGCGGCCTTGGCGGGGTCATGCTGCTGGCCCTTTGG
GTGCCACGGGATACGCTACCGCTTGGGCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAAGGCTTGGCGATGCTCTTGCG
CACACGGCATCACACCCTGCTGTTCGACGCCGGGCCGGCCAAGGGCGAAACCGACCTGGGCGAACGGGTGGTGCTGCCGA
CCCTGCGCAAGCTTGGGGTGGGCCGCCTGGACCTGATGCTGATCAGCCATGCCCATGCCGACCATGCGGGCGGCGCTGCG
GCCATCCTGCGCGGTTTGCCGGTCGGCCGGGTGATTGGCGGTGAAGCGTTGAGTGGCGTTCAGTTGCAGCCTTGCAGCAG
TGGCGAGCGATGGACGTGGGATGGCGTGCATTTTTCGCTTTGGCGCTGGGAGGACGGGCAAAGCAGCAATGATCGCTCTT
GTGTACTGATGGTCGAAGCGCGGGGCGAGCGTTTGCTGCTGGCGGGGGACATGGAGGCTGGCGCCGAGCGGGCTTGGCTG
GCGGACACCGAAGTGCCTCGCATCGACTGGCTGCAGGCGCCCCACCATGGCAGCCGTAGTTCTTCCACCGAGGCCTTTAT
CCGCGCCACGATACCGCGCGGGGTGCTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AGCGTTATCGGCGGCATGGGGTGGTGGTGTATGACACGGCAGTGGAGGGGGCATTGCGGTTGGTGATGGGCGGGCATGGG
AGCGTCGAAAGTGTGGGGCGGCAGCGGAGGTTCTGGCGGGGGAAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-460)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-669)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.194

97.959

0.57
  comA Ralstonia pseudosolanacearum GMI1000

34.231

100

0.363

Multiple sequence alignment