Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OCX61_RS19960 Genome accession   NZ_AP025944
Coordinates   4454693..4455328 (-) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas sp. LRP2-20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4449693..4460328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX61_RS19930 (KMS_R39100) murB 4450791..4451810 (-) 1020 WP_261941047.1 UDP-N-acetylmuramate dehydrogenase -
  OCX61_RS19935 (KMS_R39110) - 4451807..4452271 (-) 465 WP_261941048.1 low molecular weight protein-tyrosine-phosphatase -
  OCX61_RS19940 (KMS_R39120) kdsB 4452271..4453035 (-) 765 WP_261941049.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OCX61_RS19945 (KMS_R39130) - 4453032..4453217 (-) 186 WP_003247142.1 Trm112 family protein -
  OCX61_RS19950 (KMS_R39140) lpxK 4453261..4454262 (-) 1002 WP_261941050.1 tetraacyldisaccharide 4'-kinase -
  OCX61_RS19955 (KMS_R39150) - 4454262..4454696 (-) 435 WP_085675533.1 ExbD/TolR family protein -
  OCX61_RS19960 (KMS_R39160) exbB 4454693..4455328 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OCX61_RS19965 (KMS_R39170) comA 4455722..4457929 (-) 2208 WP_261941051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCX61_RS19970 (KMS_R39180) - 4458072..4458698 (+) 627 WP_261941052.1 DUF2062 domain-containing protein -
  OCX61_RS19975 (KMS_R39190) - 4458582..4459361 (-) 780 WP_085675531.1 ABC transporter permease -
  OCX61_RS19980 (KMS_R39200) - 4459358..4460290 (-) 933 WP_261941053.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=95596 OCX61_RS19960 WP_016391244.1 4454693..4455328(-) (exbB) [Pseudomonas sp. LRP2-20]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=95596 OCX61_RS19960 WP_016391244.1 4454693..4455328(-) (exbB) [Pseudomonas sp. LRP2-20]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAAATCCTCGCGGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTCGAACGCTACAT
CAGCACCCTCGGCACCATCGCTGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTACTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGCGGTATCTCCAAGGCCCTGGTCACCACGGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment