Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHX56_RS04035 Genome accession   NZ_CP148753
Coordinates   871260..871775 (-) Length   171 a.a.
NCBI ID   WP_043544512.1    Uniprot ID   A0A095W5S3
Organism   Achromobacter veterisilvae strain AB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 866260..876775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX56_RS04010 (WHX56_04010) - 867736..868353 (+) 618 WP_129242291.1 TetR/AcrR family transcriptional regulator -
  WHX56_RS04015 (WHX56_04015) - 868611..869471 (+) 861 WP_338880549.1 cysteine hydrolase -
  WHX56_RS04020 (WHX56_04020) - 869551..870147 (-) 597 WP_129242290.1 TetR/AcrR family transcriptional regulator -
  WHX56_RS04025 (WHX56_04025) - 870279..870584 (-) 306 WP_129242289.1 DUF4148 domain-containing protein -
  WHX56_RS04030 (WHX56_04030) - 870658..870963 (-) 306 WP_129242288.1 DUF4148 domain-containing protein -
  WHX56_RS04035 (WHX56_04035) ssb 871260..871775 (-) 516 WP_043544512.1 single-stranded DNA-binding protein Machinery gene
  WHX56_RS04040 (WHX56_04040) - 872078..873262 (-) 1185 WP_129242284.1 MFS transporter -
  WHX56_RS04045 (WHX56_04045) uvrA 873440..876325 (+) 2886 WP_129242283.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18448.46 Da        Isoelectric Point: 5.9656

>NTDB_id=955467 WHX56_RS04035 WP_043544512.1 871260..871775(-) (ssb) [Achromobacter veterisilvae strain AB1]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGASYGGGGGYDDAPRQQRAAPAQRPAPQQRPAPAAAPASSGA
NLADMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=955467 WHX56_RS04035 WP_043544512.1 871260..871775(-) (ssb) [Achromobacter veterisilvae strain AB1]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGACGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCGGC
AATCTGCAATATGTCCATTGCCACCACCTCCACCTGGAAAGACAAGGCTTCCGGCGAACGCCGCGAAGAAACGGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCCGAAATTGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGCCTCAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGCCAGCTATGGCGGTGGCGGCGGCTACGACGACGCGCCGCGCC
AGCAGCGCGCCGCCCCGGCGCAGCGCCCGGCGCCCCAGCAGCGTCCGGCTCCCGCGGCGGCCCCGGCCAGCAGCGGCGCC
AACCTGGCGGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A095W5S3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.846

100

0.573
  ssb Neisseria meningitidis MC58

51.351

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.351

100

0.556
  ssb Glaesserella parasuis strain SC1401

50

100

0.544