Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHX55_RS27795 Genome accession   NZ_CP148752
Coordinates   6095553..6096071 (-) Length   172 a.a.
NCBI ID   WP_007984430.1    Uniprot ID   J3GBT4
Organism   Pseudomonas fluorescens strain AB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6090553..6101071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS27765 (WHX55_27735) - 6090717..6091826 (-) 1110 WP_150755409.1 DUF3182 family protein -
  WHX55_RS27770 (WHX55_27740) - 6091878..6092045 (-) 168 WP_353741661.1 hypothetical protein -
  WHX55_RS27775 (WHX55_27745) - 6092112..6093104 (-) 993 WP_150757827.1 GlxA family transcriptional regulator -
  WHX55_RS27780 (WHX55_27750) - 6093206..6093766 (+) 561 WP_150726874.1 cysteine hydrolase family protein -
  WHX55_RS27785 (WHX55_27755) - 6093987..6094487 (+) 501 WP_150726873.1 DUF417 family protein -
  WHX55_RS27790 (WHX55_27760) - 6094518..6095390 (-) 873 WP_353741662.1 AraC family transcriptional regulator -
  WHX55_RS27795 (WHX55_27765) ssb 6095553..6096071 (-) 519 WP_007984430.1 single-stranded DNA-binding protein Machinery gene
  WHX55_RS27800 (WHX55_27770) - 6096081..6097478 (-) 1398 WP_353741663.1 MFS transporter -
  WHX55_RS27805 (WHX55_27775) uvrA 6097670..6100504 (+) 2835 WP_353741664.1 excinuclease ABC subunit UvrA -
  WHX55_RS27810 (WHX55_27780) bfr 6100570..6101034 (-) 465 WP_150726869.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19060.17 Da        Isoelectric Point: 5.9314

>NTDB_id=955458 WHX55_RS27795 WP_007984430.1 6095553..6096071(-) (ssb) [Pseudomonas fluorescens strain AB1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGGNNYQQSAPRQQAPRPQQSAPQQSRPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=955458 WHX55_RS27795 WP_007984430.1 6095553..6096071(-) (ssb) [Pseudomonas fluorescens strain AB1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAAATCGCTGGCGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAGCAGGGCCAGGGCGGTGGTAACAACTACCAGCAATCTGCGCCAC
GCCAGCAGGCTCCGCGTCCACAGCAGTCGGCGCCGCAACAGTCGCGCCCGGCTCCACAGCAGGCGGCTCCTCAGCCGGCT
CCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3GBT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.111

100

0.587
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.517
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.494
  ssb Neisseria meningitidis MC58

46.893

100

0.483