Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QMM27_RS10185 Genome accession   NZ_AP025939
Coordinates   2001676..2002338 (-) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain Utah_35B-24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1996676..2007338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM27_RS10160 (Utah35B_19700) - 1996826..1997092 (-) 267 WP_001278167.1 Veg family protein -
  QMM27_RS10165 (Utah35B_19710) dnaB 1997094..1998446 (-) 1353 WP_000852481.1 replicative DNA helicase -
  QMM27_RS10170 (Utah35B_19720) rplI 1998490..1998942 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  QMM27_RS10175 (Utah35B_19730) - 1998939..2000912 (-) 1974 WP_000715109.1 DHH family phosphoesterase -
  QMM27_RS10180 (Utah35B_19740) raiA 2001048..2001596 (-) 549 WP_000599104.1 ribosome-associated translation inhibitor RaiA -
  QMM27_RS10185 (Utah35B_19750) comFC/cflB 2001676..2002338 (-) 663 WP_000649971.1 ComF family protein Machinery gene
  QMM27_RS10190 (Utah35B_19760) comFA/cflA 2002335..2003633 (-) 1299 WP_000867588.1 DEAD/DEAH box helicase Machinery gene
  QMM27_RS10195 (Utah35B_19770) - 2003689..2004324 (+) 636 WP_000395739.1 YigZ family protein -
  QMM27_RS10200 (Utah35B_19780) cysK 2004609..2005535 (+) 927 WP_000029875.1 cysteine synthase A -
  QMM27_RS10205 (Utah35B_19790) tsf 2005657..2006697 (-) 1041 WP_000808068.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=95477 QMM27_RS10185 WP_000649971.1 2001676..2002338(-) (comFC/cflB) [Streptococcus pneumoniae strain Utah_35B-24]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=95477 QMM27_RS10185 WP_000649971.1 2001676..2002338(-) (comFC/cflB) [Streptococcus pneumoniae strain Utah_35B-24]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914

Multiple sequence alignment