Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACF1RT_RS07805 Genome accession   NZ_CP172847
Coordinates   1566951..1567616 (-) Length   221 a.a.
NCBI ID   WP_002269522.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1561951..1572616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS07785 (ACF1RT_07785) - 1562671..1563306 (+) 636 WP_002263021.1 hypothetical protein -
  ACF1RT_RS07790 (ACF1RT_07790) - 1563386..1565086 (-) 1701 WP_002263022.1 zinc ribbon domain-containing protein -
  ACF1RT_RS07795 (ACF1RT_07795) - 1565106..1566200 (-) 1095 WP_002300280.1 hypothetical protein -
  ACF1RT_RS07800 (ACF1RT_07800) hpf 1566324..1566872 (-) 549 WP_002269521.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACF1RT_RS07805 (ACF1RT_07805) comFC/cflB 1566951..1567616 (-) 666 WP_002269522.1 ComF family protein Machinery gene
  ACF1RT_RS07810 (ACF1RT_07810) comFA/cflA 1567613..1568914 (-) 1302 WP_002269523.1 DEAD/DEAH box helicase Machinery gene
  ACF1RT_RS07815 (ACF1RT_07815) - 1568987..1569616 (+) 630 WP_002263027.1 YigZ family protein -
  ACF1RT_RS07820 (ACF1RT_07820) cysK 1569707..1570633 (+) 927 WP_002263028.1 cysteine synthase A -
  ACF1RT_RS07825 (ACF1RT_07825) - 1570967..1572058 (-) 1092 WP_002267044.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26070.24 Da        Isoelectric Point: 9.3689

>NTDB_id=954447 ACF1RT_RS07805 WP_002269522.1 1566951..1567616(-) (comFC/cflB) [Streptococcus mutans strain DPC6143]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGGICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSTYKFQGDYLLRKVFIKPIKKALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYYDLLGKEDVSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=954447 ACF1RT_RS07805 WP_002269522.1 1566951..1567616(-) (comFC/cflB) [Streptococcus mutans strain DPC6143]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGGTATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTACTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAAA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATTATGATTTATTAGGCAAAGAAGATGTTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae TIGR4

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae Rx1

43.891

100

0.439
  comFC/cflB Streptococcus pneumoniae D39

43.891

100

0.439
  comFC/cflB Streptococcus pneumoniae R6

43.891

100

0.439
  comFC/cflB Streptococcus mitis SK321

43.439

100

0.434