Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   ACF1RT_RS07580 Genome accession   NZ_CP172847
Coordinates   1524623..1525279 (+) Length   218 a.a.
NCBI ID   WP_002291703.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1519623..1530279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS07550 (ACF1RT_07550) - 1519858..1520112 (-) 255 WP_002262064.1 DUF3165 family protein -
  ACF1RT_RS07555 (ACF1RT_07555) typA 1520141..1521985 (-) 1845 WP_226710899.1 translational GTPase TypA -
  ACF1RT_RS07560 (ACF1RT_07560) - 1522219..1522608 (-) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  ACF1RT_RS07565 (ACF1RT_07565) - 1522618..1523589 (-) 972 WP_002262061.1 ROK family glucokinase -
  ACF1RT_RS07570 (ACF1RT_07570) - 1523582..1523788 (-) 207 WP_002262060.1 YqgQ family protein -
  ACF1RT_RS07575 (ACF1RT_07575) dpr 1523995..1524522 (-) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  ACF1RT_RS07580 (ACF1RT_07580) cclA/cilC 1524623..1525279 (+) 657 WP_002291703.1 A24 family peptidase Machinery gene
  ACF1RT_RS07585 (ACF1RT_07585) trpA 1525516..1526298 (-) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  ACF1RT_RS07590 (ACF1RT_07590) trpB 1526302..1527513 (-) 1212 WP_002262056.1 tryptophan synthase subunit beta -
  ACF1RT_RS07595 (ACF1RT_07595) - 1527510..1528091 (-) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  ACF1RT_RS07600 (ACF1RT_07600) trpC 1528078..1528845 (-) 768 WP_002293866.1 indole-3-glycerol phosphate synthase TrpC -
  ACF1RT_RS07605 (ACF1RT_07605) trpD 1528838..1529845 (-) 1008 WP_002264435.1 anthranilate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24825.08 Da        Isoelectric Point: 8.4751

>NTDB_id=954444 ACF1RT_RS07580 WP_002291703.1 1524623..1525279(+) (cclA/cilC) [Streptococcus mutans strain DPC6143]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFL
YLATLALSLNLQQIIWIIQIASLLGILCSLLFQKYKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=954444 ACF1RT_RS07580 WP_002291703.1 1524623..1525279(+) (cclA/cilC) [Streptococcus mutans strain DPC6143]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTGATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCCTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTGCAGCCTGCTTTTTCAAAAGTACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

43.256

98.624

0.427

  cclA/cilC Streptococcus mitis NCTC 12261

42.326

98.624

0.417

  cclA/cilC Streptococcus pneumoniae Rx1

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae D39

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae R6

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae TIGR4

41.784

97.706

0.408