Detailed information NTG0953853

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: ACH5DO_RS12810
• Genome accession: NZ_CP172432
• Coordinates: 2633703..2634389 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain DG29
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2628703..2639389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACH5DO_RS12795 (ACH5DO_12795)	-	2628823..2631453 (+)	2631	WP_000425349.1	valine--tRNA ligase	-
ACH5DO_RS12800 (ACH5DO_12800)	-	2631466..2632737 (+)	1272	WP_001108343.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
ACH5DO_RS12805 (ACH5DO_12805)	-	2632999..2633706 (+)	708	WP_000261102.1	A24 family peptidase	-
ACH5DO_RS12810 (ACH5DO_12810)	ysxA/radC	2633703..2634389 (+)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
ACH5DO_RS12815 (ACH5DO_12815)	-	2634457..2634741 (+)	285	WP_000171859.1	hypothetical protein	-
ACH5DO_RS12820 (ACH5DO_12820)	-	2634858..2635055 (-)	198	WP_000041095.1	hypothetical protein	-
ACH5DO_RS12825 (ACH5DO_12825)	-	2635215..2635688 (+)	474	WP_001236734.1	DUF4930 family protein	-
ACH5DO_RS12830 (ACH5DO_12830)	-	2635762..2635881 (+)	120	WP_000840603.1	hypothetical protein	-
ACH5DO_RS12835 (ACH5DO_12835)	mreC	2636079..2636921 (+)	843	WP_000911033.1	rod shape-determining protein MreC	-
ACH5DO_RS12840 (ACH5DO_12840)	mreD	2636921..2637451 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
ACH5DO_RS12845 (ACH5DO_12845)	rplU	2637938..2638246 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
ACH5DO_RS12850 (ACH5DO_12850)	-	2638252..2638572 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACH5DO_RS12855 (ACH5DO_12855)	rpmA	2638584..2638868 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=953853 ACH5DO_RS12810 WP_000692886.1 2633703..2634389(+) (ysxA/radC) [Staphylococcus aureus strain DG29]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=953853 ACH5DO_RS12810 WP_000692886.1 2633703..2634389(+) (ysxA/radC) [Staphylococcus aureus strain DG29]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377