Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ACH6FD_RS07330 Genome accession   NZ_CP172362
Coordinates   1408282..1409289 (+) Length   335 a.a.
NCBI ID   WP_002859650.1    Uniprot ID   Q5HT48
Organism   Campylobacter jejuni strain YH022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1403282..1414289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FD_RS07315 (ACH6FD_07315) - 1404944..1407192 (-) 2249 Protein_1421 autotransporter outer membrane beta-barrel domain-containing protein -
  ACH6FD_RS07325 (ACH6FD_07325) - 1407781..1408191 (-) 411 WP_002783915.1 hypothetical protein -
  ACH6FD_RS07330 (ACH6FD_07330) ruvB 1408282..1409289 (+) 1008 WP_002859650.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACH6FD_RS07335 (ACH6FD_07335) amaA 1409293..1410336 (+) 1044 WP_002869561.1 AI-2E family transporter -
  ACH6FD_RS07340 (ACH6FD_07340) fumC 1410366..1411757 (-) 1392 WP_002859652.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37295.85 Da        Isoelectric Point: 4.9081

>NTDB_id=952407 ACH6FD_RS07330 WP_002859650.1 1408282..1409289(+) (ruvB) [Campylobacter jejuni strain YH022]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=952407 ACH6FD_RS07330 WP_002859650.1 1408282..1409289(+) (ruvB) [Campylobacter jejuni strain YH022]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTATGAAACTTCATTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGGGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATTGATGAAATTCATCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGAGCTACAACGCGT
GCAGGTATGCTTAGTAATCCTTTGCGAGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
TCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGGGTAAGAGATTTTGCTGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGAGTGAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACTGCTGCTAAACAAAAACCTATCGGACTTGCAAGCATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HT48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.461

99.701

0.693
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Streptococcus pneumoniae TIGR4

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae R6

48.632

98.209

0.478
  ruvB Streptococcus pneumoniae D39

48.632

98.209

0.478
  ruvB Synechocystis sp. PCC 6803

49.533

95.821

0.475