Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RZR80_RS10050 | Genome accession | NZ_CP148138 |
| Coordinates | 2112266..2112763 (+) | Length | 165 a.a. |
| NCBI ID | WP_049212214.1 | Uniprot ID | A0AAJ4RET5 |
| Organism | Proteus mirabilis strain PM-OXA-10 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2073019..2116062 | 2112266..2112763 | within | 0 |
Gene organization within MGE regions
Location: 2073019..2116062
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RZR80_RS09775 (RZR80_09775) | rnt | 2073019..2073657 (+) | 639 | WP_004243132.1 | ribonuclease T | - |
| RZR80_RS09780 (RZR80_09780) | - | 2073728..2074936 (-) | 1209 | WP_272541168.1 | transposase | - |
| RZR80_RS09785 (RZR80_09785) | tnpA | 2074959..2075375 (+) | 417 | WP_004248160.1 | IS200/IS605 family transposase | - |
| RZR80_RS09790 (RZR80_09790) | - | 2075527..2075865 (-) | 339 | WP_004243134.1 | Grx4 family monothiol glutaredoxin | - |
| RZR80_RS09795 (RZR80_09795) | - | 2076143..2076373 (+) | 231 | WP_046335367.1 | DNA polymerase III subunit theta | - |
| RZR80_RS09800 (RZR80_09800) | - | 2076378..2076638 (+) | 261 | WP_230506988.1 | hypothetical protein | - |
| RZR80_RS09805 (RZR80_09805) | - | 2077104..2077334 (+) | 231 | WP_232334715.1 | helix-turn-helix transcriptional regulator | - |
| RZR80_RS09810 (RZR80_09810) | - | 2077427..2077897 (-) | 471 | WP_253846620.1 | hypothetical protein | - |
| RZR80_RS09815 (RZR80_09815) | - | 2078037..2078297 (-) | 261 | WP_004247524.1 | hypothetical protein | - |
| RZR80_RS09820 (RZR80_09820) | - | 2078314..2078580 (-) | 267 | WP_049202079.1 | hypothetical protein | - |
| RZR80_RS09825 (RZR80_09825) | - | 2078577..2079263 (-) | 687 | WP_017627864.1 | hypothetical protein | - |
| RZR80_RS09830 (RZR80_09830) | - | 2079263..2079595 (-) | 333 | WP_017627865.1 | hypothetical protein | - |
| RZR80_RS09835 (RZR80_09835) | - | 2079585..2083310 (-) | 3726 | WP_052169999.1 | DUF1983 domain-containing protein | - |
| RZR80_RS09840 (RZR80_09840) | - | 2083310..2083708 (-) | 399 | WP_004251558.1 | hypothetical protein | - |
| RZR80_RS09845 (RZR80_09845) | - | 2083740..2084045 (-) | 306 | WP_004251562.1 | hypothetical protein | - |
| RZR80_RS09850 (RZR80_09850) | - | 2084057..2084638 (-) | 582 | WP_004251564.1 | hypothetical protein | - |
| RZR80_RS09855 (RZR80_09855) | - | 2084638..2085234 (-) | 597 | WP_004251569.1 | hypothetical protein | - |
| RZR80_RS09860 (RZR80_09860) | - | 2085235..2088510 (-) | 3276 | WP_124740970.1 | phage tail tape measure protein | - |
| RZR80_RS09865 (RZR80_09865) | - | 2088551..2088781 (-) | 231 | WP_004251574.1 | DUF4035 domain-containing protein | - |
| RZR80_RS09870 (RZR80_09870) | - | 2088826..2089242 (-) | 417 | WP_124740971.1 | hypothetical protein | - |
| RZR80_RS09875 (RZR80_09875) | - | 2089307..2089972 (-) | 666 | WP_058336217.1 | hypothetical protein | - |
| RZR80_RS09880 (RZR80_09880) | - | 2089982..2090323 (-) | 342 | WP_004251583.1 | DUF3168 domain-containing protein | - |
| RZR80_RS09885 (RZR80_09885) | - | 2090329..2090802 (-) | 474 | WP_108716967.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| RZR80_RS09890 (RZR80_09890) | - | 2090792..2091121 (-) | 330 | WP_108716966.1 | phage head closure protein | - |
| RZR80_RS09895 (RZR80_09895) | - | 2091130..2091456 (-) | 327 | WP_058336093.1 | head-tail connector protein | - |
| RZR80_RS09900 (RZR80_09900) | - | 2091456..2091692 (-) | 237 | WP_277268260.1 | hypothetical protein | - |
| RZR80_RS09905 (RZR80_09905) | - | 2091738..2092952 (-) | 1215 | WP_058336091.1 | phage major capsid protein | - |
| RZR80_RS09910 (RZR80_09910) | - | 2092964..2093815 (-) | 852 | WP_124740972.1 | head maturation protease, ClpP-related | - |
| RZR80_RS09915 (RZR80_09915) | - | 2093812..2095143 (-) | 1332 | WP_063693233.1 | phage portal protein | - |
| RZR80_RS09920 (RZR80_09920) | - | 2095144..2096886 (-) | 1743 | WP_063693229.1 | terminase TerL endonuclease subunit | - |
| RZR80_RS09925 (RZR80_09925) | - | 2096840..2097307 (-) | 468 | WP_036905779.1 | phage terminase small subunit P27 family | - |
| RZR80_RS09930 (RZR80_09930) | - | 2097426..2097764 (-) | 339 | WP_004242468.1 | HNH endonuclease | - |
| RZR80_RS09935 (RZR80_09935) | - | 2098662..2099123 (-) | 462 | WP_004251606.1 | lysis protein | - |
| RZR80_RS09940 (RZR80_09940) | - | 2099126..2099284 (-) | 159 | WP_004244729.1 | hypothetical protein | - |
| RZR80_RS09945 (RZR80_09945) | - | 2099266..2099736 (-) | 471 | WP_004251609.1 | lysozyme | - |
| RZR80_RS09950 (RZR80_09950) | - | 2099736..2100005 (-) | 270 | WP_004251611.1 | hypothetical protein | - |
| RZR80_RS09955 (RZR80_09955) | - | 2100144..2100401 (+) | 258 | WP_109829143.1 | hypothetical protein | - |
| RZR80_RS09960 (RZR80_09960) | - | 2100355..2100666 (-) | 312 | WP_109829144.1 | hypothetical protein | - |
| RZR80_RS09965 (RZR80_09965) | - | 2100910..2101932 (-) | 1023 | WP_124740974.1 | site-specific DNA-methyltransferase | - |
| RZR80_RS09970 (RZR80_09970) | - | 2102005..2102199 (-) | 195 | WP_036901019.1 | hypothetical protein | - |
| RZR80_RS09975 (RZR80_09975) | - | 2102358..2103038 (-) | 681 | WP_036901017.1 | bacteriophage antitermination protein Q | - |
| RZR80_RS09980 (RZR80_09980) | - | 2103066..2104091 (-) | 1026 | WP_088207156.1 | DUF968 domain-containing protein | - |
| RZR80_RS09985 (RZR80_09985) | - | 2104091..2104798 (-) | 708 | WP_124740975.1 | DNA-binding protein | - |
| RZR80_RS09990 (RZR80_09990) | - | 2104970..2106061 (-) | 1092 | WP_124740976.1 | replication protein | - |
| RZR80_RS09995 (RZR80_09995) | - | 2106074..2106253 (-) | 180 | WP_124740979.1 | DUF4222 domain-containing protein | - |
| RZR80_RS10000 (RZR80_10000) | - | 2106250..2106423 (-) | 174 | WP_004251659.1 | hypothetical protein | - |
| RZR80_RS10005 (RZR80_10005) | - | 2106511..2106969 (-) | 459 | WP_124740977.1 | YmfL family putative regulatory protein | - |
| RZR80_RS10010 (RZR80_10010) | - | 2107008..2107235 (-) | 228 | WP_036900931.1 | helix-turn-helix transcriptional regulator | - |
| RZR80_RS10015 (RZR80_10015) | - | 2107331..2108005 (+) | 675 | WP_049213205.1 | S24 family peptidase | - |
| RZR80_RS10020 (RZR80_10020) | - | 2108087..2109022 (+) | 936 | WP_036900929.1 | hypothetical protein | - |
| RZR80_RS10025 (RZR80_10025) | - | 2109015..2109752 (+) | 738 | WP_223852282.1 | HIRAN domain-containing protein | - |
| RZR80_RS10030 (RZR80_10030) | - | 2110005..2110208 (+) | 204 | WP_049255036.1 | hypothetical protein | - |
| RZR80_RS10035 (RZR80_10035) | - | 2110416..2110790 (+) | 375 | WP_004247126.1 | hypothetical protein | - |
| RZR80_RS10040 (RZR80_10040) | - | 2110856..2111683 (+) | 828 | WP_004247125.1 | DUF2303 family protein | - |
| RZR80_RS10045 (RZR80_10045) | - | 2111740..2112273 (+) | 534 | WP_109829194.1 | hypothetical protein | - |
| RZR80_RS10050 (RZR80_10050) | ssb | 2112266..2112763 (+) | 498 | WP_049212214.1 | single-stranded DNA-binding protein | Machinery gene |
| RZR80_RS10055 (RZR80_10055) | - | 2112779..2113117 (+) | 339 | WP_049212213.1 | hypothetical protein | - |
| RZR80_RS10060 (RZR80_10060) | - | 2113151..2113477 (+) | 327 | WP_036932464.1 | hypothetical protein | - |
| RZR80_RS10065 (RZR80_10065) | - | 2113513..2113686 (+) | 174 | WP_183129863.1 | hypothetical protein | - |
| RZR80_RS10070 (RZR80_10070) | - | 2113696..2113965 (+) | 270 | WP_286421402.1 | hypothetical protein | - |
| RZR80_RS10075 (RZR80_10075) | - | 2113958..2114203 (+) | 246 | WP_049211072.1 | hypothetical protein | - |
| RZR80_RS10080 (RZR80_10080) | - | 2114361..2114537 (+) | 177 | WP_012367596.1 | hypothetical protein | - |
| RZR80_RS10085 (RZR80_10085) | - | 2114530..2114868 (+) | 339 | WP_004247455.1 | phage protein NinX family protein | - |
| RZR80_RS10090 (RZR80_10090) | - | 2114865..2115110 (+) | 246 | WP_049211074.1 | excisionase | - |
| RZR80_RS10095 (RZR80_10095) | - | 2115067..2116062 (+) | 996 | WP_124740978.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 17966.31 Da Isoelectric Point: 7.1636
>NTDB_id=951603 RZR80_RS10050 WP_049212214.1 2112266..2112763(+) (ssb) [Proteus mirabilis strain PM-OXA-10]
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEIVVKIGGSMQMLGGASKSAGSQPAQQNPPPAQPQAQSSQPPMDFDDDIPFAPIGLPYPRH
AIYVI
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQVYI
EGQLQTREWDDNGVKRYTTEIVVKIGGSMQMLGGASKSAGSQPAQQNPPPAQPQAQSSQPPMDFDDDIPFAPIGLPYPRH
AIYVI
Nucleotide
Download Length: 498 bp
>NTDB_id=951603 RZR80_RS10050 WP_049212214.1 2112266..2112763(+) (ssb) [Proteus mirabilis strain PM-OXA-10]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAATGGCGTGACAAACAAACAGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTCGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTATGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTATACAACAGAAATTGTTGTAAAGATTGGCGG
TTCAATGCAAATGCTAGGTGGTGCTAGTAAATCAGCAGGTTCACAACCGGCACAGCAAAACCCGCCACCGGCTCAACCTC
AAGCACAGAGTAGTCAACCACCAATGGATTTCGATGACGACATCCCCTTTGCCCCTATCGGACTCCCCTACCCACGCCAC
GCTATTTATGTGATTTAA
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGGCGTGATCCTGAAATTCGTTATCTTCCTTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACATCAGAAAAATGGCGTGACAAACAAACAGGTGAAAATCGCGAAAAAACAG
AATGGCATCGTGTCGTTCTGTTTGGAAAACTCGCTGATATCGCCAGTGGCTATTTATGTAAAGGCTCGCAAGTTTATATC
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGCGTTAAACGCTATACAACAGAAATTGTTGTAAAGATTGGCGG
TTCAATGCAAATGCTAGGTGGTGCTAGTAAATCAGCAGGTTCACAACCGGCACAGCAAAACCCGCCACCGGCTCAACCTC
AAGCACAGAGTAGTCAACCACCAATGGATTTCGATGACGACATCCCCTTTGCCCCTATCGGACTCCCCTACCCACGCCAC
GCTATTTATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.627 |
100 |
0.618 |
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.545 |
| ssb | Neisseria meningitidis MC58 |
42.938 |
100 |
0.461 |
| ssb | Neisseria gonorrhoeae MS11 |
42.938 |
100 |
0.461 |