Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHO18_RS22105 Genome accession   NZ_CP148128
Coordinates   4198502..4199020 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4193502..4204020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS22075 yyaJ 4194005..4195360 (+) 1356 WP_009969183.1 MFS transporter -
  WHO18_RS22080 maa 4195394..4195948 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WHO18_RS22085 yyaH 4195966..4196346 (-) 381 WP_003244460.1 VOC family protein -
  WHO18_RS22090 ccpB 4196402..4197337 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHO18_RS22095 xth 4197396..4198154 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHO18_RS22100 rpsR 4198219..4198458 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHO18_RS22105 ssbA 4198502..4199020 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHO18_RS22110 rpsF 4199061..4199348 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHO18_RS22115 ychF 4199459..4200559 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHO18_RS22120 yyaE 4200686..4202689 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHO18_RS22125 yyzM 4202740..4202946 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=951486 WHO18_RS22105 WP_003219228.1 4198502..4199020(-) (ssbA) [Bacillus subtilis isolate FELIX_MS620]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=951486 WHO18_RS22105 WP_003219228.1 4198502..4199020(-) (ssbA) [Bacillus subtilis isolate FELIX_MS620]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378