Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHO38_RS22060 Genome accession   NZ_CP148124
Coordinates   4197646..4198164 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4192646..4203164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS22030 yyaJ 4193149..4194504 (+) 1356 WP_009969183.1 MFS transporter -
  WHO38_RS22035 maa 4194538..4195092 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WHO38_RS22040 yyaH 4195110..4195490 (-) 381 WP_003244460.1 VOC family protein -
  WHO38_RS22045 ccpB 4195546..4196481 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHO38_RS22050 xth 4196540..4197298 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHO38_RS22055 rpsR 4197363..4197602 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHO38_RS22060 ssbA 4197646..4198164 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHO38_RS22065 rpsF 4198205..4198492 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHO38_RS22070 ychF 4198603..4199703 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHO38_RS22075 yyaE 4199830..4201833 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHO38_RS22080 yyzM 4201884..4202090 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=951354 WHO38_RS22060 WP_003219228.1 4197646..4198164(-) (ssbA) [Bacillus subtilis isolate FELIX_MS521]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=951354 WHO38_RS22060 WP_003219228.1 4197646..4198164(-) (ssbA) [Bacillus subtilis isolate FELIX_MS521]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378