Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHO59_RS22060 Genome accession   NZ_CP148120
Coordinates   4198181..4198699 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate FELIX_MS512     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4193181..4203699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO59_RS22030 yyaJ 4193684..4195039 (+) 1356 WP_009969183.1 MFS transporter -
  WHO59_RS22035 maa 4195073..4195627 (-) 555 Protein_4285 sugar O-acetyltransferase -
  WHO59_RS22040 yyaH 4195645..4196025 (-) 381 WP_003244460.1 VOC family protein -
  WHO59_RS22045 ccpB 4196081..4197016 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHO59_RS22050 xth 4197075..4197833 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHO59_RS22055 rpsR 4197898..4198137 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHO59_RS22060 ssbA 4198181..4198699 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHO59_RS22065 rpsF 4198740..4199027 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHO59_RS22070 ychF 4199138..4200238 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHO59_RS22075 yyaE 4200365..4202368 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHO59_RS22080 yyzM 4202419..4202625 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=951182 WHO59_RS22060 WP_003219228.1 4198181..4198699(-) (ssbA) [Bacillus subtilis isolate FELIX_MS512]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=951182 WHO59_RS22060 WP_003219228.1 4198181..4198699(-) (ssbA) [Bacillus subtilis isolate FELIX_MS512]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378