Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHO64_RS22060 Genome accession   NZ_CP148117
Coordinates   4198207..4198725 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate FELIX_MS509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4193207..4203725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO64_RS22030 yyaJ 4193710..4195065 (+) 1356 WP_009969183.1 MFS transporter -
  WHO64_RS22035 maa 4195099..4195653 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WHO64_RS22040 yyaH 4195671..4196051 (-) 381 WP_003244460.1 VOC family protein -
  WHO64_RS22045 ccpB 4196107..4197042 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHO64_RS22050 xth 4197101..4197859 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHO64_RS22055 rpsR 4197924..4198163 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHO64_RS22060 ssbA 4198207..4198725 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHO64_RS22065 rpsF 4198766..4199053 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHO64_RS22070 ychF 4199164..4200264 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHO64_RS22075 yyaE 4200391..4202394 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHO64_RS22080 yyzM 4202445..4202651 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=951074 WHO64_RS22060 WP_003219228.1 4198207..4198725(-) (ssbA) [Bacillus subtilis isolate FELIX_MS509]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=951074 WHO64_RS22060 WP_003219228.1 4198207..4198725(-) (ssbA) [Bacillus subtilis isolate FELIX_MS509]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378