Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHO62_RS22060 Genome accession   NZ_CP148114
Coordinates   4197920..4198438 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate FELIX_MS506     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4192920..4203438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO62_RS22030 yyaJ 4193423..4194778 (+) 1356 WP_009969183.1 MFS transporter -
  WHO62_RS22035 maa 4194812..4195366 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WHO62_RS22040 yyaH 4195384..4195764 (-) 381 WP_003244460.1 VOC family protein -
  WHO62_RS22045 ccpB 4195820..4196755 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHO62_RS22050 xth 4196814..4197572 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHO62_RS22055 rpsR 4197637..4197876 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHO62_RS22060 ssbA 4197920..4198438 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHO62_RS22065 rpsF 4198479..4198766 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHO62_RS22070 ychF 4198877..4199977 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHO62_RS22075 yyaE 4200104..4202107 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHO62_RS22080 yyzM 4202158..4202364 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=950966 WHO62_RS22060 WP_003219228.1 4197920..4198438(-) (ssbA) [Bacillus subtilis isolate FELIX_MS506]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=950966 WHO62_RS22060 WP_003219228.1 4197920..4198438(-) (ssbA) [Bacillus subtilis isolate FELIX_MS506]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378