Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHO32_RS22090 Genome accession   NZ_CP148112
Coordinates   4197435..4197953 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4192435..4202953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS22060 yyaJ 4192938..4194293 (+) 1356 WP_009969183.1 MFS transporter -
  WHO32_RS22065 maa 4194327..4194881 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WHO32_RS22070 yyaH 4194899..4195279 (-) 381 WP_003244460.1 VOC family protein -
  WHO32_RS22075 ccpB 4195335..4196270 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHO32_RS22080 xth 4196329..4197087 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHO32_RS22085 rpsR 4197152..4197391 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHO32_RS22090 ssbA 4197435..4197953 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHO32_RS22095 rpsF 4197994..4198281 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHO32_RS22100 ychF 4198392..4199492 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHO32_RS22105 yyaE 4199619..4201622 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHO32_RS22110 yyzM 4201673..4201879 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=950880 WHO32_RS22090 WP_003219228.1 4197435..4197953(-) (ssbA) [Bacillus subtilis isolate FELIX_MS504]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=950880 WHO32_RS22090 WP_003219228.1 4197435..4197953(-) (ssbA) [Bacillus subtilis isolate FELIX_MS504]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378