Detailed information NTG0950687

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WHO69_RS12090
• Genome accession: NZ_CP148108
• Coordinates: 2658830..2659699 (+)
• Length: 289 a.a.
• NCBI ID: WP_020333950.1
• Uniprot ID: A0AAN1CWE3
• Organism: Vibrio natriegens isolate FELIX_MS472
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2653830..2664699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHO69_RS12070	nadC	2654210..2655097 (+)	888	WP_020333946.1	carboxylating nicotinate-nucleotide diphosphorylase	-
WHO69_RS12075	pilA	2655364..2655822 (+)	459	WP_020333947.1	pilin	Machinery gene
WHO69_RS12080	pilB	2655823..2657508 (+)	1686	WP_020333948.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WHO69_RS12085	pilC	2657539..2658762 (+)	1224	WP_020333949.1	type II secretion system F family protein	Machinery gene
WHO69_RS12090	pilD	2658830..2659699 (+)	870	WP_020333950.1	A24 family peptidase	Machinery gene
WHO69_RS12095	coaE	2659700..2660314 (+)	615	WP_020333951.1	dephospho-CoA kinase	-
WHO69_RS12100	zapD	2660341..2661081 (+)	741	WP_020333952.1	cell division protein ZapD	-
WHO69_RS12105	yacG	2661155..2661349 (+)	195	WP_014232956.1	DNA gyrase inhibitor YacG	-
WHO69_RS12110	rplS	2661674..2662027 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
WHO69_RS12115	trmD	2662068..2662829 (-)	762	WP_014232957.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
WHO69_RS12120	rimM	2662857..2663405 (-)	549	WP_014232958.1	ribosome maturation factor RimM	-
WHO69_RS12125	rpsP	2663436..2663684 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32310.38 Da
• Isoelectric Point: 6.4408

>NTDB_id=950687 WHO69_RS12090 WP_020333950.1 2658830..2659699(+) (pilD) [Vibrio natriegens isolate FELIX_MS472]
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSAAISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=950687 WHO69_RS12090 WP_020333950.1 2658830..2659699(+) (pilD) [Vibrio natriegens isolate FELIX_MS472]
ATGGAAGTATTTCAGTACTACCCGTGGTTATTCGTTATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCAAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCCCGCTCCTCTTGCCAACAATGCGGTACTCCGATTCGCATTCGC
GATAACATTCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCGCAGCGATCAGCGCCAGATACCC
ACTTGTAGAAATACTGACGGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTTA
TATTCTTTACTTTCATTCTGATCGCAGCGACGTTTATCGATCTCGATACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTCTAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAATTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCAGCGCTTGGCGCTTGGCTGGGCTGGCAAGCTTTACCAATGATCATTTTGCTTTCTTCTATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGTTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.194	99.654	0.879
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	53.069	95.848	0.509
pilD	Acinetobacter nosocomialis M2	52.708	95.848	0.505
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446