Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   WHO69_RS05995 Genome accession   NZ_CP148108
Coordinates   1312044..1312631 (+) Length   195 a.a.
NCBI ID   WP_014231574.1    Uniprot ID   A0AAN0Y1X7
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307044..1317631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS05975 panP 1307110..1308756 (-) 1647 WP_020333004.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  WHO69_RS05980 - 1309010..1309522 (-) 513 WP_020333005.1 hypothetical protein -
  WHO69_RS05985 - 1309737..1310642 (-) 906 WP_014231572.1 lysine exporter LysO family protein -
  WHO69_RS05990 - 1310753..1311673 (-) 921 WP_020333006.1 HDOD domain-containing protein -
  WHO69_RS05995 tfoX 1312044..1312631 (+) 588 WP_014231574.1 TfoX/Sxy family DNA transformation protein Regulator
  WHO69_RS06000 - 1312806..1313351 (-) 546 WP_020333007.1 hypothetical protein -
  WHO69_RS06005 - 1313550..1314047 (-) 498 WP_020333008.1 response regulator -
  WHO69_RS06010 - 1314044..1315984 (-) 1941 WP_024372845.1 ATP-binding protein -
  WHO69_RS06015 - 1316171..1317436 (+) 1266 WP_020333010.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22661.01 Da        Isoelectric Point: 7.0630

>NTDB_id=950676 WHO69_RS05995 WP_014231574.1 1312044..1312631(+) (tfoX) [Vibrio natriegens isolate FELIX_MS472]
MDMTDQAFFKYVRNFSQYQKRSMFGGIGLFCDDAMFALVSNDCCYLRGGNELDEELMQLNCEKYKHVKRQTTATVNYYDV
TELFESGFSGLDELLKKSIEYSVKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVEAFLELGPVEVFNKVRQAYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLELCN

Nucleotide


Download         Length: 588 bp        

>NTDB_id=950676 WHO69_RS05995 WP_014231574.1 1312044..1312631(+) (tfoX) [Vibrio natriegens isolate FELIX_MS472]
ATGGACATGACAGACCAAGCTTTTTTTAAATACGTACGCAATTTTAGTCAATATCAGAAACGTTCCATGTTTGGCGGCAT
CGGCTTATTTTGCGATGATGCCATGTTCGCTCTTGTCAGTAATGACTGCTGTTACCTACGTGGCGGTAATGAGCTAGACG
AAGAGCTGATGCAACTAAATTGTGAAAAATATAAGCACGTCAAGAGACAAACGACGGCAACCGTTAATTATTATGATGTG
ACAGAGCTGTTTGAATCCGGCTTTTCCGGTTTAGATGAACTGTTAAAAAAATCAATAGAGTACTCAGTAAAGGAACGCAA
ATACCAAAAATCATCTGCGAGTAGACGGCTAAGGGATTTGCCGAACATGCAACTTACACTTGAGCGTATGGTGAAAAAAG
CCGGCGTTGATGATGTTGAAGCATTTTTGGAGCTTGGGCCTGTGGAAGTTTTCAATAAAGTAAGACAGGCTTACGGTAAC
GATGTAGATGTCAAACTGCTTTGGAAGTTTGCTGGTGCGATTGATGGAGTGCACTGGAAACTCATTCAAGAGCCACGTAA
AAAACAGCTTTTAGAGCTGTGTAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

89.691

99.487

0.892
  tfoX Vibrio campbellii strain DS40M4

88.144

99.487

0.877
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

70.466

98.974

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

70.466

98.974

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

70.466

98.974

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

70.466

98.974

0.697
  tfoX Vibrio cholerae strain A1552

70.466

98.974

0.697
  tfoX Aliivibrio fischeri ES114

58.333

98.462

0.574