Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHL98_RS22075 Genome accession   NZ_CP148104
Coordinates   4199739..4200257 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4194739..4205257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS22045 yyaJ 4195242..4196597 (+) 1356 WP_003243011.1 MFS transporter -
  WHL98_RS22050 maa 4196631..4197185 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WHL98_RS22055 yyaH 4197203..4197583 (-) 381 WP_003244460.1 VOC family protein -
  WHL98_RS22060 ccpB 4197639..4198574 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHL98_RS22065 xth 4198633..4199391 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHL98_RS22070 rpsR 4199456..4199695 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHL98_RS22075 ssbA 4199739..4200257 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHL98_RS22080 rpsF 4200298..4200585 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHL98_RS22085 ychF 4200696..4201796 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHL98_RS22090 yyaE 4201923..4203926 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHL98_RS22095 yyzM 4203977..4204183 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=950641 WHL98_RS22075 WP_003219228.1 4199739..4200257(-) (ssbA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=950641 WHL98_RS22075 WP_003219228.1 4199739..4200257(-) (ssbA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378