Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WHL49_RS20910 Genome accession   NZ_CP148103
Coordinates   4040766..4041284 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4035766..4046284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS20880 yyaJ 4036269..4037624 (+) 1356 WP_003243011.1 MFS transporter -
  WHL49_RS20885 maa 4037658..4038212 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WHL49_RS20890 yyaH 4038230..4038610 (-) 381 WP_003244460.1 VOC family protein -
  WHL49_RS20895 ccpB 4038666..4039601 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WHL49_RS20900 xth 4039660..4040418 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WHL49_RS20905 rpsR 4040483..4040722 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WHL49_RS20910 ssbA 4040766..4041284 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WHL49_RS20915 rpsF 4041325..4041612 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WHL49_RS20920 ychF 4041723..4042823 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WHL49_RS20925 yyaE 4042950..4044953 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WHL49_RS20930 yyzM 4045004..4045210 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=950555 WHL49_RS20910 WP_003219228.1 4040766..4041284(-) (ssbA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=950555 WHL49_RS20910 WP_003219228.1 4040766..4041284(-) (ssbA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378