Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   WGK59_RS03125 Genome accession   NZ_CP148002
Coordinates   615410..615823 (+) Length   137 a.a.
NCBI ID   WP_015701647.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2427     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 610410..620823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK59_RS03105 (WGK59_03105) - 610898..613492 (-) 2595 WP_015701649.1 penicillin-binding protein 1A -
  WGK59_RS03110 (WGK59_03110) comA 613591..614388 (+) 798 WP_005693722.1 competence protein A Machinery gene
  WGK59_RS03115 (WGK59_03115) comB 614389..614895 (+) 507 WP_011272049.1 competence protein ComB Machinery gene
  WGK59_RS03120 (WGK59_03120) comC 614892..615413 (+) 522 WP_015701648.1 competence protein ComC Machinery gene
  WGK59_RS03125 (WGK59_03125) comD 615410..615823 (+) 414 WP_015701647.1 pilus assembly protein PilP Machinery gene
  WGK59_RS03130 (WGK59_03130) comE 615833..617170 (+) 1338 WP_015701646.1 type IV pilus secretin PilQ family protein Machinery gene
  WGK59_RS03135 (WGK59_03135) - 617183..617869 (+) 687 WP_015701645.1 ComF family protein -
  WGK59_RS03140 (WGK59_03140) nfuA 617945..618541 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  WGK59_RS03145 (WGK59_03145) nudC 618608..619402 (+) 795 WP_015701644.1 NAD(+) diphosphatase -
  WGK59_RS03150 (WGK59_03150) - 619438..620028 (+) 591 WP_015701643.1 YjaG family protein -
  WGK59_RS03155 (WGK59_03155) - 620168..620440 (+) 273 WP_005630954.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15707.91 Da        Isoelectric Point: 4.5625

>NTDB_id=949975 WGK59_RS03125 WP_015701647.1 615410..615823(+) (comD) [Haemophilus influenzae strain AR2427]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQIYIVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=949975 WGK59_RS03125 WP_015701647.1 615410..615823(+) (comD) [Haemophilus influenzae strain AR2427]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACATTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

98.54

100

0.985
  comD Haemophilus influenzae Rd KW20

97.81

100

0.978