Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WGK56_RS03795 Genome accession   NZ_CP148001
Coordinates   740715..741407 (+) Length   230 a.a.
NCBI ID   WP_041175037.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2632     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 735715..746407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK56_RS03775 (WGK56_03765) ampD 736996..737550 (-) 555 WP_041175038.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WGK56_RS03780 (WGK56_03770) pilA 737664..738113 (+) 450 WP_015701561.1 prepilin peptidase-dependent pilin Machinery gene
  WGK56_RS03785 (WGK56_03775) pilB 738110..739504 (+) 1395 WP_015701560.1 GspE/PulE family protein Machinery gene
  WGK56_RS03790 (WGK56_03780) pilC 739501..740718 (+) 1218 WP_015701559.1 type II secretion system F family protein Machinery gene
  WGK56_RS03795 (WGK56_03785) pilD 740715..741407 (+) 693 WP_041175037.1 prepilin peptidase Machinery gene
  WGK56_RS03800 (WGK56_03790) rho 741463..742725 (-) 1263 WP_015701557.1 transcription termination factor Rho -
  WGK56_RS03805 (WGK56_03795) metJ 742973..743290 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  WGK56_RS03810 (WGK56_03800) cueR 743304..743690 (-) 387 WP_005648963.1 Cu(I)-responsive transcriptional regulator -
  WGK56_RS03815 (WGK56_03805) - 743767..743973 (+) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  WGK56_RS03820 (WGK56_03810) - 744059..744265 (+) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  WGK56_RS03825 (WGK56_03815) - 744339..744545 (+) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  WGK56_RS03830 (WGK56_03820) - 744619..744825 (+) 207 WP_015701556.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26774.79 Da        Isoelectric Point: 9.0938

>NTDB_id=949950 WGK56_RS03795 WP_041175037.1 740715..741407(+) (pilD) [Haemophilus influenzae strain AR2632]
MIYFTMFLLGGILGIALWFYLSGFITRLQQEIYATYIELFPQNRSPFQPHFASIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTVWLGATLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYWY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=949950 WGK56_RS03795 WP_041175037.1 740715..741407(+) (pilD) [Haemophilus influenzae strain AR2632]
ATGATTTACTTCACAATGTTTTTATTAGGCGGCATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTTCCACAAAACCGTTCTCCATTTCAACCGCACTTTGCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGCTAGGAGCCACACTTCTTATCCTTTGGGCAATTAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACTCTCTGTTTATGGCTACTTACAATCGGTTTATTTGGAGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCTGTCATAATTTATTTCGTCAAATATTACTGGTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(93-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

93.043

100

0.93
  pilD Haemophilus influenzae 86-028NP

93.043

100

0.93