Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WAE38_RS08045 Genome accession   NZ_CP147984
Coordinates   1625133..1626329 (+) Length   398 a.a.
NCBI ID   WP_203399224.1    Uniprot ID   -
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1620133..1631329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS08020 (WAE38_08020) gpt 1620273..1620752 (+) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  WAE38_RS08025 (WAE38_08025) gmk 1621006..1621632 (+) 627 WP_261473486.1 guanylate kinase -
  WAE38_RS08030 (WAE38_08030) radA 1621685..1623061 (-) 1377 WP_005711784.1 DNA repair protein RadA -
  WAE38_RS08035 (WAE38_08035) pilA 1623249..1623707 (+) 459 WP_075605061.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WAE38_RS08040 (WAE38_08040) pilB 1623755..1625140 (+) 1386 WP_203399225.1 GspE/PulE family protein Machinery gene
  WAE38_RS08045 (WAE38_08045) pilC 1625133..1626329 (+) 1197 WP_203399224.1 type II secretion system F family protein Machinery gene
  WAE38_RS08050 (WAE38_08050) - 1626326..1626994 (+) 669 WP_035491631.1 prepilin peptidase -
  WAE38_RS08055 (WAE38_08055) dapE 1627078..1628211 (+) 1134 WP_021113185.1 succinyl-diaminopimelate desuccinylase -
  WAE38_RS08060 (WAE38_08060) clpX 1628285..1629535 (-) 1251 WP_338823461.1 ATP-dependent protease ATP-binding subunit ClpX -
  WAE38_RS08065 (WAE38_08065) clpP 1629542..1630123 (-) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  WAE38_RS08070 (WAE38_08070) - 1630224..1630613 (+) 390 WP_010787002.1 SufE family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45743.58 Da        Isoelectric Point: 10.1818

>NTDB_id=949840 WAE38_RS08045 WP_203399224.1 1625133..1626329(+) (pilC) [Glaesserella parasuis strain H16SD2BY4]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISNGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=949840 WAE38_RS08045 WP_203399224.1 1625133..1626329(+) (pilC) [Glaesserella parasuis strain H16SD2BY4]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACTAACATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGATCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCTCATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCAACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGTTTGTATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

98.995

100

0.99
  pilC Haemophilus influenzae Rd KW20

38.404

100

0.387
  pilC Haemophilus influenzae 86-028NP

38.155

100

0.384