Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WAE38_RS06155 Genome accession   NZ_CP147984
Coordinates   1197941..1198483 (-) Length   180 a.a.
NCBI ID   WP_021115958.1    Uniprot ID   A0A836YZ57
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1192941..1203483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS06130 (WAE38_06130) argF 1193279..1194289 (-) 1011 WP_160429367.1 ornithine carbamoyltransferase -
  WAE38_RS06135 (WAE38_06135) - 1194438..1194716 (+) 279 WP_005712614.1 type II toxin-antitoxin system RelE/ParE family toxin -
  WAE38_RS06140 (WAE38_06140) - 1194727..1194999 (+) 273 WP_005712616.1 HigA family addiction module antitoxin -
  WAE38_RS06145 (WAE38_06145) rhlB 1195063..1196283 (+) 1221 WP_021112303.1 ATP-dependent RNA helicase RhlB -
  WAE38_RS06150 (WAE38_06150) - 1196293..1197780 (+) 1488 WP_078208823.1 helicase HerA-like C-terminal domain-containing protein -
  WAE38_RS06155 (WAE38_06155) ssb 1197941..1198483 (-) 543 WP_021115958.1 single-stranded DNA-binding protein Machinery gene
  WAE38_RS06160 (WAE38_06160) uvrA 1198786..1201614 (+) 2829 WP_261572723.1 excinuclease ABC subunit UvrA -
  WAE38_RS06165 (WAE38_06165) - 1201698..1202078 (+) 381 WP_010786782.1 YacL family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19938.78 Da        Isoelectric Point: 4.9833

>NTDB_id=949835 WAE38_RS06155 WP_021115958.1 1197941..1198483(-) (ssb) [Glaesserella parasuis strain H16SD2BY4]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=949835 WAE38_RS06155 WP_021115958.1 1197941..1198483(-) (ssb) [Glaesserella parasuis strain H16SD2BY4]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTCCAAAT
GCTAGATAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836YZ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

100

100

1
  ssb Vibrio cholerae strain A1552

50.265

100

0.528
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.45
  ssb Neisseria meningitidis MC58

43.956

100

0.444